Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14i06
(489 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 206 9e-54
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 206 9e-54
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 1.8
Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical pr... 27 9.7
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 27 9.7
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 27 9.7
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 27 9.7
AF100307-8|AAC68937.2| 250|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 206 bits (502), Expect = 9e-54
Identities = 92/152 (60%), Positives = 116/152 (76%)
Frame = +2
Query: 32 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 211
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 212 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 391
RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120
Query: 392 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDV 487
F L+P R +C VGRLSHE+GW+++DV
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDV 152
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 206 bits (502), Expect = 9e-54
Identities = 92/152 (60%), Positives = 116/152 (76%)
Frame = +2
Query: 32 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 211
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 212 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 391
RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120
Query: 392 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDV 487
F L+P R +C VGRLSHE+GW+++DV
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDV 152
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -2
Query: 485 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 318
HH H H +G V R H E H + E GTHH + H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435
>Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical
protein F25D1.5 protein.
Length = 277
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 26 MTGFSNKAIVIDGRGHLLGRLAAVI 100
M FS K+++I G + +GR AAVI
Sbjct: 1 MARFSGKSVIITGSSNGIGRSAAVI 25
>Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical
protein R08H2.1 protein.
Length = 277
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 26 MTGFSNKAIVIDGRGHLLGRLAAVI 100
M FS K+I+I G +GR AAVI
Sbjct: 1 MARFSGKSIIITGSSSGIGRSAAVI 25
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -1
Query: 345 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 169
YV+ +L++F + S L + L + + + WKGP +L+ + + +F+K
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209
Query: 168 LPE 160
LPE
Sbjct: 210 LPE 212
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -1
Query: 345 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 169
YV+ +L++F + S L + L + + + WKGP +L+ + + +F+K
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209
Query: 168 LPE 160
LPE
Sbjct: 210 LPE 212
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -1
Query: 345 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 169
YV+ +L++F + S L + L + + + WKGP +L+ + + +F+K
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209
Query: 168 LPE 160
LPE
Sbjct: 210 LPE 212
>AF100307-8|AAC68937.2| 250|Caenorhabditis elegans Hypothetical
protein T12B5.13 protein.
Length = 250
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 149 QINISGNFFRNKLKLM-SFLRKRCNVNPARGPFHF 250
Q + S NFF+NK K++ +FL+K+ + FHF
Sbjct: 93 QCDKSNNFFKNKNKIIYAFLQKKSFQKHRQLMFHF 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,618,416
Number of Sequences: 27780
Number of extensions: 238791
Number of successful extensions: 564
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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