Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h19
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   1.3  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       24   3.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    23   4.1  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        23   5.4  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    23   5.4  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    23   7.2  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    22   9.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    22   9.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    22   9.5  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    22   9.5  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 216 HVLPVHNLHILNCW 175
           HVLP+  L +LNC+
Sbjct: 405 HVLPIRQLFLLNCY 418


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 213 VLPVHNLHILNCWRCPW 163
           VLPV+   +L C  C W
Sbjct: 38  VLPVYTSKVLRCSHCGW 54


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 210 LPVHNLHILNCWRCP 166
           L   +LH+L+C +CP
Sbjct: 213 LAAQHLHLLSCQKCP 227


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 213 VLPVHNLHILNCWRCPW 163
           VLPV+   +L C +C W
Sbjct: 50  VLPVYTNKVLCCSQCDW 66


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 81   KIGEFKFGEDXFTLRYVLGDEQPVRFVAKDIASSLKY 191
            +I EF+  +  F L  +  DEQ +R V  D   S  Y
Sbjct: 1232 RIVEFRRKQANFQLIVITHDEQFIRLVNSDAYCSYYY 1268


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 63  IKMAQVKIGEFKFGEDXFTLRYV 131
           + + ++K+G+FK G D   LR +
Sbjct: 37  VAIKKIKVGQFKDGIDISALREI 59


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 3   VCFALSSNRHASL 41
           +CF LS+N H SL
Sbjct: 111 ICFPLSNNAHDSL 123


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 138  DEQPVRFVAKDIASSLKYVNCERAI 212
            +EQ VRFV++ +   L Y++ +  I
Sbjct: 928  EEQLVRFVSRQVLYGLSYLHSKGII 952


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 75   QVKIGEFKFGEDXFTLRYVLGDEQPVRFV 161
            Q+KI   +F     TLR++  DE+  RF+
Sbjct: 3950 QIKILPSRFTNIEDTLRFLRHDEEAKRFL 3978


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 132 LGDEQPVRFVAKDIASSLKYV 194
           L D+  VRF ++DI   ++YV
Sbjct: 467 LSDDLQVRFPSEDIPKFIEYV 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,037
Number of Sequences: 5004
Number of extensions: 9020
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)