Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h18
         (138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    24   3.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    23   5.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    23   7.3  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    23   7.3  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 109 RYQPWCNW 86
           RY+PWCN+
Sbjct: 703 RYEPWCNY 710


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 97  WCNWRTAMVAKMVK 56
           WC W T +VAK ++
Sbjct: 506 WCLWITVLVAKFLE 519


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 22  KAVNIEERXXXXXXXXXXXXFANYTMADTEKAPQPQP 132
           +  ++EE+              N T+ DT  +PQ QP
Sbjct: 396 ETTSLEEKNVDNQEFVTSISNGNQTLEDTSHSPQTQP 432


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 137 CWGCGCGAFSV 105
           CW  GCG F +
Sbjct: 405 CWTTGCGEFDI 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,268
Number of Sequences: 5004
Number of extensions: 6869
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)