Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14h18
(138 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0229 + 1834102-1834358,1834442-1834901 28 1.2
05_01_0551 + 4827676-4829226 28 1.2
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281... 27 2.8
04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501 27 2.8
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 26 3.7
02_02_0412 - 9950286-9950380,9950530-9951203,9951402-9951580,995... 26 3.7
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 26 4.8
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 26 4.8
08_01_0303 + 2493388-2493954 26 4.8
04_01_0563 - 7216923-7217300,7217401-7217544,7217680-7218729 26 4.8
12_02_0240 - 16174724-16174927,16175005-16175097,16175199-161752... 25 6.4
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 25 6.4
10_02_0070 - 4919843-4919913,4921086-4921455 25 8.5
04_03_0171 + 12223269-12223508,12223594-12224262,12224399-12224899 25 8.5
03_01_0323 - 2522834-2523229,2524737-2524952 25 8.5
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 25 8.5
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 96 GVIGERRWWQRW 61
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>05_01_0551 + 4827676-4829226
Length = 516
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 134 WGCGCGAFSVSAMV*LANGDGGKDGKILHDLSSMFTAF 21
WG C F + +GDGG GK+ + S F AF
Sbjct: 418 WGSDCREFRPERWLSTGDGDGGA-GKVRQEPSYKFAAF 454
>11_01_0370 +
2814888-2814979,2815450-2815620,2815753-2815834,
2816275-2816316,2816397-2816456,2816817-2816913,
2817382-2819024,2819155-2819256,2819369-2819509,
2819625-2819750,2819935-2820096
Length = 905
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 56 FYHLCHHRRSPITPWLIPKRRRS 124
F+HLCH+ + + PW K S
Sbjct: 518 FHHLCHNAGADLVPWTDAKPESS 540
>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
Length = 506
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 81 RRWWQRW*NTPRPLLDVHRFSS 16
RRW W +TP L+D H SS
Sbjct: 81 RRWRPLWRSTPLVLVDAHLLSS 102
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -3
Query: 136 VGAAAAAPFRYQPWCNWRT---AMVAKMVKYSTTSPRC 32
V AAAAAP R + W +WRT + Y T + RC
Sbjct: 6 VAAAAAAPARSR-WPSWRTPPRSSTPSRRSYLTATRRC 42
>02_02_0412 -
9950286-9950380,9950530-9951203,9951402-9951580,
9952578-9952633,9953233-9953262,9953820-9953982
Length = 398
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 121 AAPFRYQPWCNWRTAMVA 68
AA PWC WR A VA
Sbjct: 27 AAGLTPSPWCGWRRAAVA 44
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 87 GERRWWQRW*NTPRPLLDV 31
GE+ WWQ + TPR L +V
Sbjct: 272 GEKVWWQEFDVTPRQLEEV 290
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 87 GERRWWQRW*NTPRPLLDV 31
GE+ WWQ + TPR L +V
Sbjct: 255 GEKVWWQEFDVTPRQLEEV 273
>08_01_0303 + 2493388-2493954
Length = 188
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 35 SRRGRGVFYHLCHHRR--SPITPWLIPKRRRS 124
SRR V H C RR SP+T + RRRS
Sbjct: 20 SRRSAAVELHRCSRRRRPSPLTTTVALTRRRS 51
>04_01_0563 - 7216923-7217300,7217401-7217544,7217680-7218729
Length = 523
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 81 RRWWQRW*NTPRPLLDVHRF 22
RRW W +TP L+D H F
Sbjct: 98 RRWRPLWRSTPLVLVDAHLF 117
>12_02_0240 -
16174724-16174927,16175005-16175097,16175199-16175258,
16175708-16175789,16175873-16176075,16176222-16177226,
16177371-16177643
Length = 639
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 97 WCNWRTAMVAKMVKYSTT 44
WC W+T + K VK T
Sbjct: 5 WCGWKTTLNTKFVKTGRT 22
>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
Length = 625
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 74 HRRSPITPWLIPKRRRSRSP 133
HRR+ I WL P+ ++ P
Sbjct: 265 HRRAQILSWLFPRAKKKAKP 284
>10_02_0070 - 4919843-4919913,4921086-4921455
Length = 146
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 41 RGRGVFYHLCHHRRSPITPWL 103
R R C RR+P+ PWL
Sbjct: 76 RSRSASRTCCSRRRTPLCPWL 96
>04_03_0171 + 12223269-12223508,12223594-12224262,12224399-12224899
Length = 469
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 97 WCNWRTAMVAKMVKYSTT 44
WC W+T + K VK T
Sbjct: 216 WCGWKTTLNKKFVKTGRT 233
>03_01_0323 - 2522834-2523229,2524737-2524952
Length = 203
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 2 DLTCYDEKR*TSRRGRGVFY 61
D+ CYDE + S R RGV +
Sbjct: 46 DILCYDEVKTISIRSRGVVF 65
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 25.0 bits (52), Expect = 8.5
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -1
Query: 99 HGVIGERRWWQRW 61
+G + E+ WW+RW
Sbjct: 271 YGRLNEQSWWERW 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,455,696
Number of Sequences: 37544
Number of extensions: 64986
Number of successful extensions: 261
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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