Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h18
         (138 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   1.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   3.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   5.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   5.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   5.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          19   7.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   7.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    18   9.5  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 93  VIGERRWWQRW 61
           VI +R WW+R+
Sbjct: 70  VIDKRPWWERY 80


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 86  PITPWLIPKRRRSRSP 133
           P+T   +PK  +++SP
Sbjct: 211 PVTLTTVPKHSKTKSP 226


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 108 GISHGVIGERRW 73
           G  HGVIG   W
Sbjct: 109 GDVHGVIGAGHW 120


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 65  DGKILHDLSSMFTA 24
           DG  L D++ +FT+
Sbjct: 534 DGNFLSDINGVFTS 547


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -1

Query: 96  GVIGERRW 73
           GV+G+R+W
Sbjct: 377 GVLGQRQW 384



 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 136 VGAAAAAPFRYQPW 95
           V   +A  +R+QPW
Sbjct: 545 VMVCSAPVWRFQPW 558


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 103 DTEKAPQPQPQ 135
           DTE +PQ  PQ
Sbjct: 341 DTEISPQTSPQ 351



 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 83  SPITPWLIPKRRRSR 127
           SP+ PW+  +  R R
Sbjct: 258 SPLYPWMRSQFERKR 272


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -1

Query: 90 IGERRWWQR 64
          I  +RWW R
Sbjct: 40 IKRKRWWSR 48


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 134 WGCGCGAFSVSAMV 93
           W  GC  F  +AMV
Sbjct: 297 WFLGCTIFLFAAMV 310


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 57  FTIFATIAV 83
           FTI ATIAV
Sbjct: 537 FTIIATIAV 545


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -3

Query: 124 AAAPFRYQPWCNWR 83
           A+ P  Y+ W +W+
Sbjct: 853 ASDPAVYEDWRHWK 866


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,240
Number of Sequences: 438
Number of extensions: 500
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)