Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h17
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    31   0.064
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   0.79 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.3  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   7.3  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    24   9.7  
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom...    24   9.7  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 31.5 bits (68), Expect = 0.064
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 113 RRNLHVGVVHSASKPNIEKPKPGFGKSYRRIVHFPEQYTVKP 238
           R++LHV V     KP IE+P+  +G   R  V++ E+   +P
Sbjct: 68  RKHLHVKVRRDRGKPLIEEPEENYGIKDRIPVYYEEEELPEP 109


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 105  IAVAMVKLEKSLFKAIIYLILKLK 34
            + +  +K+EKSL+K   YL L LK
Sbjct: 1061 LPILSIKIEKSLYKGFCYLYLTLK 1084


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 123 RFRLATIAVAMVKLEKSLFKAIIYLILKLKHKTVDG 16
           RFRLA   +  ++L+   F A+   +    H+T DG
Sbjct: 601 RFRLANDRIHEIELKPLSFNAVNSYVQATLHRTDDG 636


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 176 PGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPET 277
           P +   Y+ I H  +Q   +P+E T+ A   P T
Sbjct: 31  PDYDAEYQFINHHMQQLLTRPVEGTHSASVHPST 64


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 379 KSYTDYRRWMQNCACSFSGSW 441
           KSY +YR W  N   +FS  W
Sbjct: 322 KSYYEYRSWFHN-VTNFSRIW 341


>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 238

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 365 PPQEEKVIQIIEDGCRTAHVAL 430
           PP+  K I+ + DG R+A V +
Sbjct: 39  PPEGPKAIECVSDGVRSAAVLM 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,144
Number of Sequences: 5004
Number of extensions: 40425
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)