Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h17
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0083 + 631196-631675                                             30   1.0  
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    29   1.8  
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    29   2.4  
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482...    29   2.4  
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634...    29   2.4  
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080...    28   3.1  
07_01_0244 + 1786009-1788048                                           27   5.5  

>01_01_0083 + 631196-631675
          Length = 159

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 396 IICITFSSCGGPSVGPTLYQSIQ*YLCFIPPPIPLATTRPVSGSLPA 256
           ++ + FS+    + G T Y +   Y C +PPP P+ T  P   S P+
Sbjct: 7   LVILVFSALVALAAGDT-YPADCPYPCLLPPPTPVTTDCPPPPSTPS 52


>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 47  IKYIMALNRLFSNLTIATAMVARRNLHVGVVHSASKPNIEKPK 175
           I+YI  L  +  NL I+ AMV   +   G+++S  + N EK K
Sbjct: 344 IRYICFLTNIMDNLNISKAMVTMSSGRCGIINSIIRRN-EKCK 385


>11_06_0557 -
           24955837-24956214,24957225-24957395,24957576-24957635,
           24958419-24958623,24958710-24958953,24959103-24959394,
           24959734-24960828,24960915-24961409,24961665-24961823,
           24961893-24962387
          Length = 1197

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 47  IKYIMALNRLFSNLTIATAMVARRNLHVGVVHSASKPNIEKPK 175
           I+YI  L  +  NL I+ AMV   +   G+++S  + N EK K
Sbjct: 344 IRYICFLTNIVDNLNISKAMVTMSSGRCGIINSIIRRN-EKCK 385


>06_03_1507 -
           30646168-30646254,30646350-30646490,30648109-30648202,
           30648445-30648509,30648934-30649176,30649442-30649499,
           30649957-30650037,30650323-30650533,30650975-30651141,
           30651216-30651268,30651600-30651681,30651765-30651914,
           30652027-30652111,30652189-30652393,30652502-30652573,
           30652911-30653456
          Length = 779

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 91  HRYCDGGET-KSSRWCCSFCE*TQYRKA 171
           HR C G  T     WCC +CE  Q R++
Sbjct: 452 HRECVGFTTIPRGTWCCRYCENRQQRES 479


>04_04_0156 +
           23160681-23160862,23161090-23161179,23163145-23163433,
           23164574-23164669,23164755-23165123
          Length = 341

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 86  LTIATAMVARRNLH--VGVVHSASKPNIEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLA 259
           L   T MVAR N+H  VG + S     I+  +PG  + Y+    FP +    P +    A
Sbjct: 275 LADGTRMVARFNMHHTVGDIRSF----IDASRPGATRPYQLQTGFPPKQLADPAQTVEQA 330

Query: 260 G 262
           G
Sbjct: 331 G 331


>01_06_0134 +
           26805329-26805430,26807130-26807230,26807876-26808032,
           26808386-26808582,26809188-26809287,26809501-26809536
          Length = 230

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 88  NHRYCDGGETKSSRWCCSFCE*TQYRKAETWFRKKL 195
           + R+C GG   +SR     CE T   + E  FRKKL
Sbjct: 182 HERFCSGGVVLASRDGKIVCENTLDARLEVVFRKKL 217


>07_01_0244 + 1786009-1788048
          Length = 679

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -1

Query: 318 CFIPPPIPLATTRPVSGSLPARFVTSKGFTVYCSG 214
           CF P PIPL  T   + S  + FV    F V CSG
Sbjct: 63  CFYPYPIPLQYTGGETRSFTSTFV----FAVTCSG 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,345,926
Number of Sequences: 37544
Number of extensions: 251130
Number of successful extensions: 676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)