Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h17
         (459 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020212-1|AAH20212.1|  305|Homo sapiens mitochondrial ribosomal...    57   3e-08
BC013685-1|AAH13685.1|  305|Homo sapiens mitochondrial ribosomal...    57   3e-08
AF132956-1|AAD27731.1|  353|Homo sapiens CGI-22 protein protein.       57   3e-08
AL355385-2|CAI13780.1|  302|Homo sapiens protein ( Human DNA seq...    44   2e-04
AK127451-1|BAC86986.1|  124|Homo sapiens protein ( Homo sapiens ...    30   4.4  
AK126199-1|BAC86483.1|  176|Homo sapiens protein ( Homo sapiens ...    30   4.4  
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ...    29   5.8  

>BC020212-1|AAH20212.1|  305|Homo sapiens mitochondrial ribosomal
           protein L2 protein.
          Length = 305

 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
 Frame = +2

Query: 221 QYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGP--TEGPPQEEKVIQI 394
           +YT+ P+++    GRD  TGR+           +Y  ID+ R  P  T+  P EEKVIQ+
Sbjct: 71  KYTITPVKMRKSGGRD-HTGRIRVHGIGGGHKQRYRMIDFLRFRPEETKSGPFEEKVIQV 129

Query: 395 IEDGCRTAHVALVAVGDKLKY 457
             D CR+A +ALVA G + ++
Sbjct: 130 RYDPCRSADIALVAGGSRKRW 150


>BC013685-1|AAH13685.1|  305|Homo sapiens mitochondrial ribosomal
           protein L2 protein.
          Length = 305

 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
 Frame = +2

Query: 221 QYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGP--TEGPPQEEKVIQI 394
           +YT+ P+++    GRD  TGR+           +Y  ID+ R  P  T+  P EEKVIQ+
Sbjct: 71  KYTITPVKMRKSGGRD-HTGRIRVHGIGGGHKQRYRMIDFLRFRPEETKSGPFEEKVIQV 129

Query: 395 IEDGCRTAHVALVAVGDKLKY 457
             D CR+A +ALVA G + ++
Sbjct: 130 RYDPCRSADIALVAGGSRKRW 150


>AF132956-1|AAD27731.1|  353|Homo sapiens CGI-22 protein protein.
          Length = 353

 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
 Frame = +2

Query: 221 QYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGP--TEGPPQEEKVIQI 394
           +YT+ P+++    GRD  TGR+           +Y  ID+ R  P  T+  P EEKVIQ+
Sbjct: 71  KYTITPVKMRKSGGRD-HTGRIRVHGIGGGHKQRYRMIDFLRFRPEETKSGPFEEKVIQV 129

Query: 395 IEDGCRTAHVALVAVGDKLKY 457
             D CR+A +ALVA G + ++
Sbjct: 130 RYDPCRSADIALVAGGSRKRW 150


>AL355385-2|CAI13780.1|  302|Homo sapiens protein ( Human DNA
           sequence from clone RP11-387M24 on chromosome 6 Contains
            the 5' end of a gene for a novel protein (KIAA0076
           KIAA0708), the  ).
          Length = 302

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = +2

Query: 221 QYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGP--TEGPPQEEKVIQI 394
           +YT+ P+++    GRD  TGR+           +Y  ID+ R  P  T+  P EEKVIQ+
Sbjct: 71  KYTITPVKMRKSGGRD-HTGRIRVHGIGGGHKQRYRMIDFLRFRPEETKSGPFEEKVIQV 129

Query: 395 IEDGCRTAHVALVAVGDKLKY 457
             D    + +ALVA G + ++
Sbjct: 130 RYD---PSDIALVAGGSRKRW 147


>AK127451-1|BAC86986.1|  124|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45543 fis, clone BRTHA2033469. ).
          Length = 124

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 409 ASIFYNLYNFFFLWWTLSRPNSVPVYPVIFVFYTSSDTFSDHTSCFWIPS 260
           A+  Y LY FFFL W+LS    +    VI          S ++SC  +PS
Sbjct: 58  ANFLYFLYFFFFLRWSLSVLPKLEYSGVISAHCNFCLPGSSNSSCLSLPS 107


>AK126199-1|BAC86483.1|  176|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44211 fis, clone THYMU3002661. ).
          Length = 176

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 409 ASIFYNLYNFFFLWWTLSRPNSVPVYPVIFVFYTSSDTFSDHTSCFWIPS 260
           A+  Y LY FFFL W+LS    +    VI          S ++SC  +PS
Sbjct: 110 ANFLYFLYFFFFLRWSLSVLPKLEYSGVISAHCNFCLPGSSNSSCLSLPS 159


>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
            protein.
          Length = 1362

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 104  MVARRNLHVGVVHSAS-KPNIEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPE 274
            +V    +H  ++ S    P++    P   +S +  VH P++  +KP++V     R PE
Sbjct: 1109 VVKEEKIHSPIIRSEPFSPSLRPEPPKHPESIKAPVHLPQRPEMKPVDVGRPVIRPPE 1166


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,371,377
Number of Sequences: 237096
Number of extensions: 1454204
Number of successful extensions: 3585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3580
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)