Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14h07
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 173 1e-44
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 50 1e-07
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 33 0.027
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.0
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 1.8
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 26 2.3
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 26 3.1
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 25 4.1
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 5.4
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 25 5.4
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.1
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 7.1
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 7.1
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 9.4
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 173 bits (421), Expect = 1e-44
Identities = 85/129 (65%), Positives = 101/129 (78%), Gaps = 1/129 (0%)
Frame = +1
Query: 64 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 240
MDEEYDVIVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+ L +L+A F
Sbjct: 1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLN-LTQLYALFRPGE 59
Query: 241 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 420
E+ GR RDW VDL+PKFLMANG L +LI+T VTRY+EFK I GSYVY+ G+I+KVP
Sbjct: 60 QRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119
Query: 421 VDQKEALAS 447
++ EAL S
Sbjct: 120 GNEMEALKS 128
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 50.4 bits (115), Expect = 1e-07
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +1
Query: 76 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 204
YDVI++GT L+ ILS LS + ++VLHID N +YG S+T
Sbjct: 7 YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLT 49
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 32.7 bits (71), Expect = 0.027
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 70 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 171
++ D+I++G G+ C L L G+KVL ++R+
Sbjct: 4 QDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 1.0
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 142 GKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 312
GKK + +RN Y ++ PL K + P+ ++ + +D N D + L+ N
Sbjct: 2 GKKSVSFNRNNYKKRKNERTEPLPRRIFKNDKPSKFKSKRKEKDKNSDAYDEMLLNN 58
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 208 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 300
L L K A AP +TY + W +PKF
Sbjct: 32 LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 131 CRFLGRRFCTSIAISTTVVNLRQL 202
CR L R+F ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 238 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV 348
P P + G + + V F++ANG L+K LIH +
Sbjct: 14 PRPAQALGINQPF-VSAYLSFVLANGFLLKWLIHYSI 49
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 85 IVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 192
IV+G GL + + G VL +D+N +GG S
Sbjct: 42 IVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGGNS 77
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 329 CLFTRASPGTWSLSPSKEVMFTKVEKS 409
C+F R S TWS+ S M ++ KS
Sbjct: 487 CVFIRTSMQTWSMFRSTHSMKQEIAKS 513
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 154 LHIDRNKYYGGESASITPLEELFAKFNAPAPD 249
L D N + A++ LE +F KF + PD
Sbjct: 266 LQADENDVHSSRIATLKVLEGIFEKFASTLPD 297
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 170 LRSMCKTFFPETDNMPLKIHSFKPVPRTITSYSSS 66
LRS + F T +P+ + P P T S++SS
Sbjct: 195 LRSSIRHIFLVTMGLPVDLDELLPTPSTQGSFNSS 229
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 7.1
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 128 CCRFLGRRFCTSIAISTTV-VNLRQLPR*RSCSLSSTHRHLMKHTVEVETGTLT*FLSF* 304
C G F T+++ T VN R+L SC +S ++ ++H E FL
Sbjct: 354 CAALHGCTFETNVSTLTEKRVNFRKLILWASCGSASIYKEKLRHKPSQEERLCLDFLEKC 413
Query: 305 WLMDC 319
+DC
Sbjct: 414 LELDC 418
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 374 MDLNSKYRVTPV*ISNLTSNPLAIRNLGIKSTFQSRPRPYVSSGAGALNL 225
+D+N Y V SN+ P+ + G+ F + P+ S+GA LN+
Sbjct: 480 IDVNY-YPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNI 528
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 63 YDSVKDQLDLTNY 25
YDSV+DQLD +Y
Sbjct: 149 YDSVQDQLDANDY 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,000
Number of Sequences: 5004
Number of extensions: 40383
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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