Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h07
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    29   0.018
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   8.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 29.5 bits (63), Expect = 0.018
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 283 DLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKI 408
           DL  + ++ N  LV  +   G++R +E  + EG+Y  +GGKI
Sbjct: 760 DLAARNVLVNAALVCKIADFGLSREIE-SATEGAYTTRGGKI 800


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 200 LPR*RSCSLSSTHRH 244
           + R R  SLSSTH H
Sbjct: 633 MERERDASLSSTHSH 647


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 112 ILLSLFPGQSHRILHPL**CKRSTRF 35
           IL +  PG+  R   P   CK S RF
Sbjct: 404 ILCACCPGRVRRRYQPAFRCKPSQRF 429


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 359 WSLSPSKEVMFTKVEKSPKYLSIR 430
           W L    E  +      PKYLS+R
Sbjct: 15  WDLKNLTEAEYLAKVLGPKYLSMR 38


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 136 VSGKKVLHIDRNKYYGGESASIT 204
           V GK+++ + RN+ Y G+    T
Sbjct: 103 VIGKEIVAVCRNEEYTGDDCQKT 125


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 52  YTIIMDEEYDVIVLG 96
           Y II+D+E+D   +G
Sbjct: 467 YVIILDDEHDDAFIG 481


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 54  HYHNG*RIRCDCPGNRL 104
           HY N  R+R  CP + L
Sbjct: 372 HYENEMRLRNGCPADWL 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,594
Number of Sequences: 438
Number of extensions: 2869
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)