Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h06
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0542 - 11352655-11352759,11353320-11353496,11353589-113536...    31   0.44 
05_01_0122 - 842013-842163,842439-843168,844307-844505                 28   3.1  
01_07_0371 - 43128880-43129968                                         27   4.1  
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221...    27   5.4  
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692     26   9.4  

>02_02_0542 -
           11352655-11352759,11353320-11353496,11353589-11353699,
           11355606-11355667,11355739-11355941,11357109-11357281
          Length = 276

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 297 RAVMTASMRMIAPAFFTSTSRHFSKARGFIPLLILST 187
           + V   + R+I   +F S  RH+ +  G++P ++ ST
Sbjct: 159 KCVQQGASRVIVSPYFLSPGRHWKQVDGYLPYVLFST 195


>05_01_0122 - 842013-842163,842439-843168,844307-844505
          Length = 359

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 200 RSGIKPRAFEK*RDVDVKNAGAIILIDAVMTARILDLGVCCNYHRRD 340
           R G+     E   DVD+KN G +++++      + ++G+  +  R D
Sbjct: 189 REGMALNCLEAPLDVDIKNGGRVVVLNTANLPMVKEVGLGADLVRID 235


>01_07_0371 - 43128880-43129968
          Length = 362

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 191 DNIRSGIKPRAFEK*RDVDVKNAGAIILIDAVMTARILDLGVCCNYHRRD 340
           D  R G+     E   DVD+KN G +++++      + ++G+  +  R D
Sbjct: 185 DKDREGMVLNCLEAPLDVDIKNGGRVVVLNTQNLPLVKEVGLGADLVRID 234


>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
            17722189-17722332,17722415-17722722,17723433-17723568,
            17723748-17723841,17723976-17724073,17724951-17725004,
            17725704-17726150,17726227-17726393,17726540-17726663,
            17726751-17726837,17727000-17727056,17727492-17727560,
            17727664-17727811,17727893-17728116,17728842-17728958,
            17729649-17729742,17730573-17730640,17733278-17733334,
            17733412-17733511,17733638-17733674,17734077-17734200,
            17735254-17735322,17735371-17735410,17735905-17735993,
            17736849-17736953,17737033-17737104,17737814-17737936,
            17738049-17738117,17738966-17739059,17739145-17739231,
            17740184-17740351,17740436-17740552,17741484-17741590,
            17741671-17741803,17742564-17742667,17743504-17743629,
            17744148-17744216,17744996-17745064,17745278-17745358,
            17745444-17745533,17745896-17746000,17747803-17747873,
            17748320-17748461,17749266-17749330,17750081-17750168,
            17750236-17750325,17750437-17750673,17751064-17751170,
            17751625-17751832,17752376-17752546
          Length = 2366

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 340  IATMIIATNS*IKNSSGHDSVDENDRACIFY 248
            +AT I    S   +SSGHD VD N    I+Y
Sbjct: 1233 LATSIARNTSEGLSSSGHDPVDSNAENDIYY 1263


>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
          Length = 455

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 305 DLGVCCNYHRRDRAVCRKSKTP 370
           DL  C +YHRR +     SKTP
Sbjct: 126 DLSKCRDYHRRHKVCEAHSKTP 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,835,646
Number of Sequences: 37544
Number of extensions: 130797
Number of successful extensions: 297
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)