Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14h05
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 49 5e-07
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.26
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.3
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 26 4.3
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 26 4.3
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 25 5.7
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.5
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 7.5
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 25 7.5
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 25 9.9
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 25 9.9
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 9.9
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 25 9.9
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 25 9.9
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 48.8 bits (111), Expect = 5e-07
Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Frame = +1
Query: 169 NVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGA--KDSNSKDLR 342
N RT+D+ + K ++ +++ N G + + + + ++ + K+ K
Sbjct: 26 NAIRTIDLRSTYTKTLTSLIIVNEGDEPQNTYRYFQQTSPGESVLSLSVSIKEEEKKGTN 85
Query: 343 LAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVG 522
+ YD + L+ P+ G + ++++ ++P P A+ Q E+Q++ Y+
Sbjct: 86 PIKVNNNVYD------IPLQPPVKPGESRTLLIQAGLDGGVRPLPAAVDQDEEQYLVYLT 139
Query: 523 NLYTYSPYYT 552
LY SPY T
Sbjct: 140 TLYLDSPYTT 149
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.26
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = +1
Query: 184 VDISTQLVKVVSKIVLENSGKSSVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRLA 348
VD+ +QL++++ KIVL+ S S + FL A++ + +I D D +A
Sbjct: 994 VDLPSQLIELLEKIVLQPSSFSENANLQNLLFLTAIKADKSRVMEYIDKLDKYDVD-EIA 1052
Query: 349 ETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQE 498
E ++ Y + +R+ + A +V + V Q Y + Q E
Sbjct: 1053 EIAIENGLYEEAFRIYKIHNKHEQAMKVLVEDIVSLDRAQDYAETVEQPE 1102
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 4.3
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1
Query: 148 SSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKS 249
SSDI N+D T DISTQ S + NSG S
Sbjct: 1303 SSDIPKANIDFTNDISTQNTFPASPV--SNSGFS 1334
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 531 IQIANIFHKLVFLLSYSCRIW 469
+ IA +F L+F +S+ C IW
Sbjct: 277 VVIAFVFLSLIFFISFICPIW 297
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 142 TISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHF 264
T+ K+KN ++ VK+ ++ E++ KS+VKH+
Sbjct: 132 TLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHY 172
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 236 FSKTIFDTTFTSWVDISTVRSTFFNFISLDIVSTLALRVCIVRNNTKKSVN 84
F K + D ++V STV + I L++V ALR ++ +N K N
Sbjct: 80 FDKAMLDPYNLNYVSPSTVVFQRGSVIVLELVLLFALREYVLSSNVKDQRN 130
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 211 VVSKIVLENSGKSSVK 258
VVSKI +EN KSS+K
Sbjct: 244 VVSKIKIENHSKSSIK 259
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 435 CCRNCVHQSFTTISDS 482
CCRNCV +S T +S
Sbjct: 483 CCRNCVERSTTWFIES 498
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 260 CFTDDLPLFSKTIFDTTFTSWVD 192
C +LP FSKT ++ T + +D
Sbjct: 884 CVVGELPFFSKTCYNATVVAELD 906
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/43 (27%), Positives = 16/43 (37%)
Frame = +3
Query: 390 CGAQGTPKRRCHSKCCCRNCVHQSFTTISDSYNSARRPVCEIC 518
CG G R C C NC +Q+ S+ + C C
Sbjct: 22 CGENGHQARECTKGSICYNC-NQTGHKASECTEPQQEKTCYAC 63
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 313 AKDSNSKDLRLAETTVKGYDYVKFWRV 393
A ++ +DLR+ + TVK Y + W V
Sbjct: 340 ALNNTIRDLRIRKQTVKAQMYTRLWIV 366
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 295 YSSQLLQPQKENVLLTICHC 236
+S ++LQ QKE +L + HC
Sbjct: 70 FSDRVLQLQKERKVLVLIHC 89
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 391 VELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYT-YSPYYTS 555
V+L+ L V + +FT ++P I + D+ ++ NL+T +S ++ S
Sbjct: 8 VDLERGLELCKPEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDS 63
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 391 VELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYT-YSPYYTS 555
V+L+ L V + +FT ++P I + D+ ++ NL+T +S ++ S
Sbjct: 28 VDLERGLELCKPEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDS 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,691
Number of Sequences: 5004
Number of extensions: 45762
Number of successful extensions: 142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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