Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h05
         (556 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00281-1|CAA68392.1|  607|Homo sapiens protein ( Human mRNA for ...   103   6e-22
CR456742-1|CAG33023.1|  607|Homo sapiens RPN1 protein.                103   6e-22
BC010839-1|AAH10839.1|  607|Homo sapiens ribophorin I protein.        103   6e-22
AK223595-1|BAD97315.1|  607|Homo sapiens ribophorin I variant pr...   101   2e-21
BC007995-1|AAH07995.1|  568|Homo sapiens Similar to ribophorin I...    97   4e-20
X95486-1|CAA64752.1| 1640|Homo sapiens clathrin heavy chain poly...    30   4.7  
U60803-1|AAB40909.1| 1569|Homo sapiens clathrin heavy chain 2 pr...    30   4.7  
U60802-1|AAB40908.1| 1626|Homo sapiens clathrin heavy chain 2 pr...    30   4.7  
U41763-1|AAC50494.1| 1640|Homo sapiens muscle clathrin heavy cha...    30   4.7  
BC019895-1|AAH19895.1|  373|Homo sapiens FBLIM1 protein protein.       30   6.3  
AY180161-1|AAO49012.1|  373|Homo sapiens migfilin protein.             30   6.3  
AL450998-6|CAH70854.1|  373|Homo sapiens filamin binding LIM pro...    30   6.3  
AL450998-5|CAH70853.1|  276|Homo sapiens filamin binding LIM pro...    30   6.3  
AL133035-1|CAB61365.1|  200|Homo sapiens hypothetical protein pr...    30   6.3  
AK027444-1|BAB55115.1|  276|Homo sapiens protein ( Homo sapiens ...    30   6.3  
AF459643-1|AAO15549.1|  374|Homo sapiens filamin-binding LIM pro...    30   6.3  

>Y00281-1|CAA68392.1|  607|Homo sapiens protein ( Human mRNA for
           ribophorin I. ).
          Length = 607

 Score =  103 bits (246), Expect = 6e-22
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 7/136 (5%)
 Frame = +1

Query: 166 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 324
           ++V RTVD+S+ L KV +++VL + G  S      FL A+E   +  LA +G +    D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 325 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 504
              +L + ET +KG    +F+ V+L   L+ GA ++V+VETV+T  L PYPT ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 505 FVKYVGNLYTYSPYYT 552
           FV + GN Y YSPY T
Sbjct: 153 FVVFEGNHYFYSPYPT 168


>CR456742-1|CAG33023.1|  607|Homo sapiens RPN1 protein.
          Length = 607

 Score =  103 bits (246), Expect = 6e-22
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 7/136 (5%)
 Frame = +1

Query: 166 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 324
           ++V RTVD+S+ L KV +++VL + G  S      FL A+E   +  LA +G +    D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 325 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 504
              +L + ET +KG    +F+ V+L   L+ GA ++V+VETV+T  L PYPT ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 505 FVKYVGNLYTYSPYYT 552
           FV + GN Y YSPY T
Sbjct: 153 FVVFEGNHYFYSPYPT 168


>BC010839-1|AAH10839.1|  607|Homo sapiens ribophorin I protein.
          Length = 607

 Score =  103 bits (246), Expect = 6e-22
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 7/136 (5%)
 Frame = +1

Query: 166 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 324
           ++V RTVD+S+ L KV +++VL + G  S      FL A+E   +  LA +G +    D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 325 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 504
              +L + ET +KG    +F+ V+L   L+ GA ++V+VETV+T  L PYPT ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 505 FVKYVGNLYTYSPYYT 552
           FV + GN Y YSPY T
Sbjct: 153 FVVFEGNHYFYSPYPT 168


>AK223595-1|BAD97315.1|  607|Homo sapiens ribophorin I variant
           protein.
          Length = 607

 Score =  101 bits (241), Expect = 2e-21
 Identities = 57/136 (41%), Positives = 81/136 (59%), Gaps = 7/136 (5%)
 Frame = +1

Query: 166 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 324
           ++V RTVD+S+ L KV +++VL + G  S      FL A+E   +  LA +G +    D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 325 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 504
              +L + ET +KG    +F+ V+L   L+ GA ++V+VETV+T  L PYPT ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 505 FVKYVGNLYTYSPYYT 552
           FV + GN Y Y PY T
Sbjct: 153 FVVFEGNHYFYPPYPT 168


>BC007995-1|AAH07995.1|  568|Homo sapiens Similar to ribophorin I
           protein.
          Length = 568

 Score = 97.1 bits (231), Expect = 4e-20
 Identities = 55/130 (42%), Positives = 77/130 (59%), Gaps = 7/130 (5%)
 Frame = +1

Query: 184 VDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DSNSKDLR 342
           VD+S+ L KV +++VL + G  S      FL A+E   +  LA +G +    D    +L 
Sbjct: 1   VDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLE 60

Query: 343 LAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVG 522
           + ET +KG    +F+ V+L   L+ GA ++V+VETV+T  L PYPT ITQ E QFV + G
Sbjct: 61  VRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEG 119

Query: 523 NLYTYSPYYT 552
           N Y YSPY T
Sbjct: 120 NHYFYSPYPT 129


>X95486-1|CAA64752.1| 1640|Homo sapiens clathrin heavy chain
            polypeptide protein.
          Length = 1640

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +1

Query: 181  TVDISTQLVKVVSKIVLENSGKSSVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRL 345
            T D+  +L++++ KIVL+NS  S  ++      L A++      + +I   D N   L +
Sbjct: 997  TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055

Query: 346  AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 450
            A   V    Y + + V  K  +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089


>U60803-1|AAB40909.1| 1569|Homo sapiens clathrin heavy chain 2
            protein.
          Length = 1569

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +1

Query: 181  TVDISTQLVKVVSKIVLENSGKSSVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRL 345
            T D+  +L++++ KIVL+NS  S  ++      L A++      + +I   D N   L +
Sbjct: 997  TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055

Query: 346  AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 450
            A   V    Y + + V  K  +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089


>U60802-1|AAB40908.1| 1626|Homo sapiens clathrin heavy chain 2
            protein.
          Length = 1626

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +1

Query: 181  TVDISTQLVKVVSKIVLENSGKSSVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRL 345
            T D+  +L++++ KIVL+NS  S  ++      L A++      + +I   D N   L +
Sbjct: 997  TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055

Query: 346  AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 450
            A   V    Y + + V  K  +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089


>U41763-1|AAC50494.1| 1640|Homo sapiens muscle clathrin heavy chain
            protein.
          Length = 1640

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +1

Query: 181  TVDISTQLVKVVSKIVLENSGKSSVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRL 345
            T D+  +L++++ KIVL+NS  S  ++      L A++      + +I   D N   L +
Sbjct: 997  TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055

Query: 346  AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 450
            A   V    Y + + V  K  +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089


>BC019895-1|AAH19895.1|  373|Homo sapiens FBLIM1 protein protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 411 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 524
           KR+ H++C  CR C  Q        Y    RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237


>AY180161-1|AAO49012.1|  373|Homo sapiens migfilin protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 411 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 524
           KR+ H++C  CR C  Q        Y    RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237


>AL450998-6|CAH70854.1|  373|Homo sapiens filamin binding LIM
           protein 1 protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 411 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 524
           KR+ H++C  CR C  Q        Y    RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237


>AL450998-5|CAH70853.1|  276|Homo sapiens filamin binding LIM
           protein 1 protein.
          Length = 276

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 411 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 524
           KR+ H++C  CR C  Q        Y    RP+CE C+Q
Sbjct: 104 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 140


>AL133035-1|CAB61365.1|  200|Homo sapiens hypothetical protein
           protein.
          Length = 200

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 411 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 524
           KR+ H++C  CR C  Q        Y    RP+CE C+Q
Sbjct: 28  KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 64


>AK027444-1|BAB55115.1|  276|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14538 fis, clone NT2RM2001324, weakly similar to
           ZYXIN. ).
          Length = 276

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 411 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 524
           KR+ H++C  CR C  Q        Y    RP+CE C+Q
Sbjct: 104 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 140


>AF459643-1|AAO15549.1|  374|Homo sapiens filamin-binding LIM
           protein-1 protein.
          Length = 374

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 411 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 524
           KR+ H++C  CR C  Q        Y    RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,556,991
Number of Sequences: 237096
Number of extensions: 1473275
Number of successful extensions: 3102
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3069
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)