Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h05
         (556 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011096-1|AAR82762.1|  464|Drosophila melanogaster RE30726p pro...    83   3e-16
AE014134-1857|AAS64675.1|  458|Drosophila melanogaster CG33303-P...    83   3e-16
BT001395-1|AAN71150.1|  371|Drosophila melanogaster GH05770p pro...    52   4e-07
X51968-1|CAA36226.1|  471|Drosophila melanogaster protein ( Dros...    29   4.2  

>BT011096-1|AAR82762.1|  464|Drosophila melanogaster RE30726p
           protein.
          Length = 464

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
 Frame = +1

Query: 142 TISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKD 321
           T + +I   NV+RT+D+++QLVK  +KI  E+S    +  ++F   E +   LA+I  KD
Sbjct: 34  TANGEIVNTNVERTLDLTSQLVKTTTKISAEDSAGKPIVEYVFFTSEPS---LAYIDVKD 90

Query: 322 SNSKDLRLAETT-VKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQE 498
           ++ K +       VKG     F       P  A A    +VETV +K ++P+P  I Q +
Sbjct: 91  ASDKSVPFKRNEPVKGEQSFTF-----TFP-RAAAKQTFIVETVASKGIRPHPEEIRQND 144

Query: 499 DQFVKYVGNLYTYSPYYTS 555
            QFVKY GNL+ YS Y T+
Sbjct: 145 KQFVKYTGNLHLYSKYRTN 163


>AE014134-1857|AAS64675.1|  458|Drosophila melanogaster CG33303-PA
           protein.
          Length = 458

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
 Frame = +1

Query: 142 TISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKD 321
           T + +I   NV+RT+D+++QLVK  +KI  E+S    +  ++F   E +   LA+I  KD
Sbjct: 28  TANGEIVNTNVERTLDLTSQLVKTTTKISAEDSAGKPIVEYVFFTSEPS---LAYIDVKD 84

Query: 322 SNSKDLRLAETT-VKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQE 498
           ++ K +       VKG     F       P  A A    +VETV +K ++P+P  I Q +
Sbjct: 85  ASDKSVPFKRNEPVKGEQSFTF-----TFP-RAAAKQTFIVETVASKGIRPHPEEIRQND 138

Query: 499 DQFVKYVGNLYTYSPYYTS 555
            QFVKY GNL+ YS Y T+
Sbjct: 139 KQFVKYTGNLHLYSKYRTN 157


>BT001395-1|AAN71150.1|  371|Drosophila melanogaster GH05770p
           protein.
          Length = 371

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +1

Query: 415 AGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTS 555
           A A    +VETV +K ++P+P  I Q + QFVKY GNL+ YS Y T+
Sbjct: 24  AAAKQTFIVETVASKGIRPHPEEIRQNDKQFVKYTGNLHLYSKYRTN 70


>X51968-1|CAA36226.1|  471|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for type I retrotransposable
           element  R1Dm.  ).
          Length = 471

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 390 CGAQGTPKRRCHSKCCCRNCVHQ 458
           CG QG    +C +   CRNC H+
Sbjct: 422 CGQQGHTAAKCQNPVDCRNCRHR 444


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,464,574
Number of Sequences: 53049
Number of extensions: 469412
Number of successful extensions: 1014
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)