Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h05
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    69   2e-12
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    31   0.74 
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (gr...    28   5.2  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   6.9  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   6.9  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    27   6.9  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   6.9  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   6.9  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   6.9  

>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
 Frame = +1

Query: 160 KLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKDSNSK-D 336
           K  NVDRT+D ++Q+VKV +    EN G       L A+ +     L+FI A    SK  
Sbjct: 20  KAANVDRTIDATSQIVKVSTLYSFENVGNGPQSKVLIALSKEESATLSFISAGIDGSKGK 79

Query: 337 LRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKY 516
           L+++E   +    +  + V+L+ P+  GA V + +    T+ L+P P+ I Q + QFV  
Sbjct: 80  LKISEKPAE--KDLAVYEVDLRTPVAKGAKVTIRINLRITQVLEPLPSKIQQSDSQFVVL 137

Query: 517 VGNLYTYSPYYT 552
             + Y  S Y T
Sbjct: 138 HTSAYVPSLYET 149


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 417 RCHSKCCCRNCVHQSFTTISDSYNSARRPVC 509
           RC SK C  NC +  F  + D+  S  R +C
Sbjct: 109 RCSSKDCNHNCTNTEFDPVCDTNGSVYRNLC 139


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 184 VDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLA 303
           VD+ +++V  +SKI + ++  S  +    A  E  KNNLA
Sbjct: 119 VDVYSEIVAALSKIDVTSTTTSKTERITKAAFETCKNNLA 158


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -3

Query: 251 DDLPLFSKTIFDTTFTSWVDISTVR-STFFNFISLDIVSTLALRVCIVRNNTKKSVNCNF 75
           D + LF K     +   +  +  V+ S +FNF+   I  ++   +  + +  K S N NF
Sbjct: 325 DKIWLFDKPSMIVSHKEYQKLKLVKDSKYFNFLFFQIFGSILPSLTTLFDKQKTSNNLNF 384

Query: 74  AIAGNLISLYF 42
                L SL F
Sbjct: 385 CYLNFLCSLEF 395


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 251 DDLPLF-SKTIFDTTFTSWVDISTVRSTFFNFISLDIVSTLALRVCIVRNNTKKSVNCNF 75
           +DL +  S   F+   T W     +RST   +++L     L +  C++ +  +K   C+ 
Sbjct: 23  EDLKILPSNYTFEVPKTIW----KIRSTESKYVALQFPEGLIMYACVIADILEKYTGCDT 78

Query: 74  AIAGNL 57
            I G++
Sbjct: 79  VIMGDV 84


>U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (grd
           related) protein10 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 127 SASVDTISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSS 252
           S    TISS+I     D T+D +     V+ K+++EN   SS
Sbjct: 181 SVETTTISSEISGMETDETLDKNKCSSSVLRKLMIENISDSS 222


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 512 NMLAICIHTPRTI 550
           +M+ +CIHTPRTI
Sbjct: 61  SMITVCIHTPRTI 73


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 512 NMLAICIHTPRTI 550
           +M+ +CIHTPRTI
Sbjct: 61  SMITVCIHTPRTI 73


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 512 NMLAICIHTPRTI 550
           +M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 512 NMLAICIHTPRTI 550
           +M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 512 NMLAICIHTPRTI 550
           +M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 512 NMLAICIHTPRTI 550
           +M+ +CIHTPRTI
Sbjct: 91  SMITVCIHTPRTI 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,470,534
Number of Sequences: 27780
Number of extensions: 259056
Number of successful extensions: 758
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)