Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14h05
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 477 DSYNSARRPVCEICWQFVYILPVLYL 554
           D Y+    PVC +C+  +Y +  L++
Sbjct: 405 DKYSRIVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 477 DSYNSARRPVCEICWQFVYILPVLYL 554
           D Y+    PVC +C+  +Y +  L++
Sbjct: 405 DKYSRIVFPVCFVCFNLMYWIIYLHI 430


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 156 YKVKKCRSHSRYIDPTRKSSIKNSL 230
           YK  +CR+  R    TR S+ K  L
Sbjct: 176 YKTYQCRTKHRLTGETRLSATKGRL 200


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 477 DSYNSARRPVCEICWQFVY 533
           D Y+    PVC +C+  +Y
Sbjct: 343 DKYSRIVFPVCFVCFNLMY 361


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 496 EDQFVKYVGNLYTYSPYYT 552
           +D F +   N + Y P YT
Sbjct: 223 DDSFHRLTSNTFDYDPRYT 241


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 204 RKSSIKNSLGEQWQIVSKTFS 266
           RKS    + G Q+Q+V K F+
Sbjct: 406 RKSEHNGTNGYQYQVVGKWFN 426


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 162 VKKCRSHSRYIDPTR 206
           ++  R+H  YID TR
Sbjct: 340 IENLRNHPEYIDETR 354


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 204 RKSSIKNSLGEQWQIVSKTFS 266
           RKS    + G Q+Q+V K F+
Sbjct: 496 RKSEHNGTNGYQYQVVGKWFN 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,218
Number of Sequences: 438
Number of extensions: 3308
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)