Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14g22
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   175   2e-45
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   175   2e-45
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    26   2.6  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.5  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   4.5  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    25   4.5  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    24   7.8  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  175 bits (426), Expect = 2e-45
 Identities = 79/132 (59%), Positives = 103/132 (78%)
 Frame = +3

Query: 9   LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 188
           +++++  Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57

Query: 189 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 368
            G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  
Sbjct: 58  VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INE 116

Query: 369 GDIVTIGECXPL 404
           GD+VT+G+C PL
Sbjct: 117 GDVVTVGQCRPL 128


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  175 bits (426), Expect = 2e-45
 Identities = 79/132 (59%), Positives = 103/132 (78%)
 Frame = +3

Query: 9   LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 188
           +++++  Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57

Query: 189 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 368
            G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  
Sbjct: 58  VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INE 116

Query: 369 GDIVTIGECXPL 404
           GD+VT+G+C PL
Sbjct: 117 GDVVTVGQCRPL 128


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 284 VKVIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTL 177
           V   +  HDS+LH +FLN   +D   +   T+E  L
Sbjct: 24  VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 266 DHDSSLHL--HFLNDAGEDAAADRNVTSEGTLLVNVGT 159
           +H   +H+  H L D  + +  DRN  +EGT   N  T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 162 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 64
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 45  FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 221
           + K  T F N+ G  K   M   K  G+       A  G T+ID   P      I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221

Query: 222 TGV 230
           TGV
Sbjct: 222 TGV 224


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 75  RKGGMKRKDMRHHKNVGLGFKTPREAIEG 161
           R G     D++  +N+G+ F+TP +   G
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQFFLG 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,911
Number of Sequences: 5004
Number of extensions: 32042
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)