Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14g22
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical pr... 182 1e-46
Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 28 2.2
Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 5.1
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 5.1
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical p... 26 9.0
Z68270-10|CAA92572.2| 459|Caenorhabditis elegans Hypothetical p... 26 9.0
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 26 9.0
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 26 9.0
AY305838-1|AAR11983.1| 459|Caenorhabditis elegans nuclear recep... 26 9.0
AL031628-1|CAA20973.1| 416|Caenorhabditis elegans Hypothetical ... 26 9.0
AF083227-1|AAD03685.1| 290|Caenorhabditis elegans nuclear recep... 26 9.0
AC006632-8|AAK85473.1| 117|Caenorhabditis elegans Hypothetical ... 26 9.0
AC006621-2|AAK68262.2| 544|Caenorhabditis elegans Hypothetical ... 26 9.0
>Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical
protein F40F11.1 protein.
Length = 155
Score = 182 bits (442), Expect = 1e-46
Identities = 84/131 (64%), Positives = 101/131 (77%), Gaps = 3/131 (2%)
Frame = +3
Query: 21 MADQTEKAFQKQATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 191
M++QTE+AF KQ TV LN K + +K R+ + VGLGFK PR+A+EGTYIDKKCP+
Sbjct: 1 MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60
Query: 192 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 371
GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+ H SP FRD+ G
Sbjct: 61 GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPG 120
Query: 372 DIVTIGECXPL 404
D+VTIGEC PL
Sbjct: 121 DLVTIGECRPL 131
>Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical
protein C27C12.4 protein.
Length = 450
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 233 SENEDAENYRDPPRLPSLPTQIQ*VRETAQEYVRAFVALL 352
S+NED E+ DP LP + + E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 93 SSCHLSCSGKRWPVSETLSLSD 28
+SC++ CSG++W E S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 93 SSCHLSCSGKRWPVSETLSLSD 28
+SC++ CSG++W E S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032
>Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical
protein R06B9.1 protein.
Length = 423
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 105 ACPSSSCHLSCSGKRWPVSETLSLSDPP 22
AC S LS WP S TL L+ PP
Sbjct: 92 ACKDGSNELSAGDYVWPFSYTLPLNVPP 119
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 244 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 339
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 244 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 339
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 244 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 339
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 126 NQHSYGDACPSSSCHLSCSGKRW 58
+QH Y + + CH SC+ K W
Sbjct: 207 HQHCYQNGKSMAKCHESCNDKCW 229
>Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical
protein ZC410.1b protein.
Length = 394
Score = 26.2 bits (55), Expect = 9.0
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 138 TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKR 317
T + I T+ + +CPFT N +R + ++ V+ DY P++N F
Sbjct: 149 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 205
Query: 318 HRNM 329
+NM
Sbjct: 206 EKNM 209
>Z68270-10|CAA92572.2| 459|Caenorhabditis elegans Hypothetical
protein ZC410.1a protein.
Length = 459
Score = 26.2 bits (55), Expect = 9.0
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 138 TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKR 317
T + I T+ + +CPFT N +R + ++ V+ DY P++N F
Sbjct: 214 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 270
Query: 318 HRNM 329
+NM
Sbjct: 271 EKNM 274
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 126 NQHSYGDACPSSSCHLSCSGKRW 58
+QH Y + + CH SC+ K W
Sbjct: 207 HQHCYQNGKSMAKCHESCNDKCW 229
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 126 NQHSYGDACPSSSCHLSCSGKRW 58
+QH Y + + CH SC+ K W
Sbjct: 258 HQHCYQNGKSMAKCHESCNDKCW 280
>AY305838-1|AAR11983.1| 459|Caenorhabditis elegans nuclear receptor
NHR-11 protein.
Length = 459
Score = 26.2 bits (55), Expect = 9.0
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 138 TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKR 317
T + I T+ + +CPFT N +R + ++ V+ DY P++N F
Sbjct: 214 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 270
Query: 318 HRNM 329
+NM
Sbjct: 271 EKNM 274
>AL031628-1|CAA20973.1| 416|Caenorhabditis elegans Hypothetical
protein Y102A5D.1 protein.
Length = 416
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 47 SETGHRFPEQERWHEEEGHA 106
+E GHR P+ +W++E HA
Sbjct: 390 TELGHRKPKGNQWNKEAPHA 409
>AF083227-1|AAD03685.1| 290|Caenorhabditis elegans nuclear receptor
NHR-11 protein.
Length = 290
Score = 26.2 bits (55), Expect = 9.0
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 138 TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKR 317
T + I T+ + +CPFT N +R + ++ V+ DY P++N F
Sbjct: 166 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 222
Query: 318 HRNM 329
+NM
Sbjct: 223 EKNM 226
>AC006632-8|AAK85473.1| 117|Caenorhabditis elegans Hypothetical
protein F28A10.7 protein.
Length = 117
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -2
Query: 342 TNARTYSCAVSRTYCIWVGSEG 277
TN+ C V YC W G+ G
Sbjct: 34 TNSMYLECCVKHRYCRWYGNTG 55
>AC006621-2|AAK68262.2| 544|Caenorhabditis elegans Hypothetical
protein C52A10.2 protein.
Length = 544
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 305 PIVFG*VVKVIAADHDSSLHLHFLNDAGEDAAADRNV 195
PIVFG AA+H S L F GE + DR V
Sbjct: 430 PIVFGKNRPFNAANHGSDLRYIFGEGTGEFSKEDRQV 466
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,417,763
Number of Sequences: 27780
Number of extensions: 187342
Number of successful extensions: 559
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -