Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14g19
(404 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 37 0.001
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 36 0.003
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 32 0.029
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.090
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 31 0.090
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 30 0.12
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 27 1.1
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 2.6
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 2.6
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 3.4
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 5.9
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 24 7.8
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 24 7.8
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 24 7.8
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 36.7 bits (81), Expect = 0.001
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 11 YECKVCLERQRDAVLMPCRH-FC-VCVQCYFG---LDQKCPTCRQDV 136
Y+C +CL+ + PC H FC C+ G QKCP CR+ V
Sbjct: 204 YKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 35.5 bits (78), Expect = 0.003
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 14 ECKVCLERQRDAVLMPCRH-FC-VCVQCYFGLDQKCPTCR 127
EC++C D V+ PC H FC C+ +CPTCR
Sbjct: 168 ECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCR 207
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 32.3 bits (70), Expect = 0.029
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Frame = +2
Query: 2 EEKYECKVCLERQRDAVLMPCRH-FC-VCVQCYF-----GLDQKCPTC 124
+E CK+C E +DA+ C H FC +CV Y G + CP+C
Sbjct: 706 QENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSC 753
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 30.7 bits (66), Expect = 0.090
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 14 ECKVCLERQRDAVLMPCRH-FCV-CVQCYFGLDQKCPTCRQ 130
EC +C E + C H +C C+ + + CPTCRQ
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQ 124
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 30.7 bits (66), Expect = 0.090
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Frame = +2
Query: 5 EKYECKVCL-ERQRDAVL---MPCRHFC--VCVQCYFGLDQK-CPTCRQDVTDFIK 151
++ EC +CL E ++ L +PC H C+ Y + CP C+Q VT+ ++
Sbjct: 494 DQRECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVTNMLE 549
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 30.3 bits (65), Expect = 0.12
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 11 YECKVCLERQRDAVLMPCRHFCVCVQCYFGLDQKCPTCRQDVTDFIKIFVV 163
+ C +C + R + C H C QC +K PTC Q D +F V
Sbjct: 252 FVCLICKKDYRSPIATTCGHH-FCEQCAITRYRKTPTCIQCGADTKGLFSV 301
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 249 DLKNSVDWNGSTRKLLRVLNKRAYRQVLQCXGRYYW 356
D K++V GS R+ N+R++R Q +Y W
Sbjct: 730 DGKHNVVLGGSFATATRISNRRSFRNFYQAGYKYAW 765
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 252 LKNSVDWNGSTRKLLRVLNKRAYRQVLQCXGRYYWPDGTKFVSHVYNR 395
++N + NG+ K R+L K +Y+ L+ ++ +GT ++H Y R
Sbjct: 559 VENIMQNNGTNLKNWRILLKASYKFWLRTYRVFFLNNGTLPLNHPYVR 606
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 165 NKMVFDVYYNGYYVEKKFSKEFLIHIAPDLKNSVDW 272
N +V VY NG +F HIAP+ + DW
Sbjct: 301 NSVVSSVYMNGSNSVPRFILYSTTHIAPETEIIGDW 336
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 3.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 77 VCVQCYFGLDQKCPTCR 127
VCV+CY G++ K C+
Sbjct: 172 VCVKCYGGMETKVQVCQ 188
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 56 MPCRHFCV--CVQCYFGLDQKCPTCRQDV 136
+PC H C++ + Q CP CR+ V
Sbjct: 326 LPCGHILHFHCLRNWLERQQTCPICRRSV 354
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 186 YYNGYYVEKKFSKEFLIHIAPDLKNS 263
+ N Y+EK + EFL I P NS
Sbjct: 557 FSNENYIEKTYIDEFLDFIQPPFLNS 582
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 24.2 bits (50), Expect = 7.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = -3
Query: 393 CCTHEKQTLCHRANSICRXTATPVC 319
CC+ EK + C + C + P C
Sbjct: 263 CCSTEKTSCCSQEKKSCCTSEKPSC 287
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 24.2 bits (50), Expect = 7.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -3
Query: 381 EKQTLCHRANSICRXTATPVC 319
+KQ C IC +TP+C
Sbjct: 70 QKQIFCKLCVDICNGCSTPIC 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,852
Number of Sequences: 5004
Number of extensions: 29328
Number of successful extensions: 93
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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