Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14g19
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   7.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   7.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   7.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   9.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   9.3  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 342 GRYYWPDGTKFVSHVYNRS 398
           GRY++P+GT+ ++   N S
Sbjct: 375 GRYFYPNGTEKMTLSVNES 393


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 51  CLCLVGIFVFAFSVILD*IKSVRPVVK 131
           C+ ++GI+   +      +KS+R V K
Sbjct: 205 CIVMLGIYCRLYCYAQKHVKSIRAVTK 231


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 14  ECKVCLERQRDAV 52
           +CK C ++QR+ +
Sbjct: 75  DCKKCTDKQREVI 87


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 14  ECKVCLERQRDAV 52
           +CK C ++QR+ +
Sbjct: 75  DCKKCTDKQREVI 87


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 14  ECKVCLERQRDAV 52
           +CK C ++QR+ +
Sbjct: 75  DCKKCTDKQREVI 87


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 5/17 (29%), Positives = 14/17 (82%)
 Frame = +1

Query: 94  FWIRSKVSDLSSRRHRF 144
           +++ +KVS++++  H+F
Sbjct: 77  YFLNAKVSEIAALNHKF 93


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 375 QTLCHRANSICRXTATPVCRH 313
           QTL ++  ++ R TA  V RH
Sbjct: 81  QTLSNKEYNMLRTTAINVIRH 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,418
Number of Sequences: 438
Number of extensions: 2207
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)