Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14g18
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 234 FLLDIVVREGTSILQLLSSED---QPLLIGRDSL 142
           FL+DIVV   T I+Q  ++E     P LI +  L
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYL 165


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 234 FLLDIVVREGTSILQLLSSED---QPLLIGRDSL 142
           FL+DIVV   T I+Q  ++E     P LI +  L
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYL 165


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 234 FLLDIVVREGTSILQLLSSED---QPLLIGRDSL 142
           FL+DIVV   T I+Q  ++E     P LI +  L
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYL 165


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 223 YCSPRGYVHPPAAFQRRSTSVDWEG 149
           YC P G++     F ++  +VD  G
Sbjct: 159 YCVPAGWIWGDQGFLKKLGAVDIAG 183


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = -2

Query: 347 TASLTFFFLCLIFLGV 300
           ++S++F+  C++ LG+
Sbjct: 196 SSSISFYVPCIVMLGI 211


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 367 DENGKIHRLRRECTGEQ 417
           + +GK+HR  R  TGE+
Sbjct: 158 EHSGKLHRHMRIHTGER 174


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 219 QYPEGIHPPPGVEASWW 269
           +YP    PPP  + S W
Sbjct: 658 EYPPDSDPPPPDDISGW 674


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,028
Number of Sequences: 438
Number of extensions: 2264
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)