Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14g12
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159...    29   2.3  
07_02_0031 - 12035450-12035709,12036186-12036699                       27   9.3  
07_01_0928 + 7795586-7795615,7795716-7795873,7796151-7796212,779...    27   9.3  

>12_02_0478 +
           19514509-19514940,19515749-19515820,19515954-19515986,
           19516169-19516830,19516905-19517045,19518634-19518830,
           19518878-19518965,19518987-19519041,19519501-19519571,
           19519709-19519763,19519881-19519896,19520286-19520361,
           19521202-19521240,19521312-19521333
          Length = 652

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +1

Query: 439 CPAKLRINNA--GKVTESI--GRHNHDPPTCWMTPDGKS 543
           CP K ++ +A  G+++E I  G+HNH  P      DG S
Sbjct: 300 CPVKKKVEHAEDGQISEIIYKGKHNHQRPPNKRAKDGSS 338


>07_02_0031 - 12035450-12035709,12036186-12036699
          Length = 257

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +2

Query: 224 LIDFQYIHTRQY*SQL---IGVSINFKCI 301
           L D +Y HTR+Y S+L   IG+ ++F+ I
Sbjct: 30  LSDREYAHTREYSSELLKKIGMDVDFRAI 58


>07_01_0928 +
           7795586-7795615,7795716-7795873,7796151-7796212,
           7799021-7799081,7799767-7799911
          Length = 151

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 252 DSIKVN*SVFQLISNALSHFRYIH*HQG--ELKT 347
           DS  +N   FQL+ N   H R++  H+G  ELKT
Sbjct: 40  DSNIINPCFFQLLHNHHRHLRHVRNHRGKEELKT 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,969
Number of Sequences: 37544
Number of extensions: 301061
Number of successful extensions: 630
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)