Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14g07
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    29   0.58 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.0  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   4.1  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.1  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.4  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   9.4  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    25   9.4  

>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 333 HHFIFDAQRIIQCIKEIEGAYG 398
           HH+++D+QRII   + + G YG
Sbjct: 302 HHYLYDSQRIIFVQQSLGGLYG 323


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -1

Query: 338 MVTARTVVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKRGRTHAALHL-CVD 162
           +V   ++++G  + +GN+GTLI   + F  Y      +   +N  +  R  +   L   D
Sbjct: 332 LVPTLSLLLGNPIPYGNLGTLI--PEPFYYYGDEYLSKAQKINIGQLNRFFSEYDLDASD 389

Query: 161 LYVGGVHVKENKVINHYLLSF 99
                VH   N  ++ Y L F
Sbjct: 390 FLSSSVHKNNNSYLDQYFLDF 410


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 320 VVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKR 198
           ++    +G+ N GT   ++  +I+Y + V F MF++ Y +R
Sbjct: 277 MIFNAILGWNNTGTYGSILS-YIIYWLFVAFIMFLMWYKER 316


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 339 FIFDAQRIIQCIKEIEGAYGVRDRGNVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQM 518
           F  + QRI+  I+ +    GV   GN      YL  +  A K+  NSF  C K+I  + +
Sbjct: 170 FAGEQQRIVDEIEYLVD--GVTFSGNSSASR-YLSLIGIAEKMFDNSFRLCLKSIRDVFL 226

Query: 519 YVNE 530
            + E
Sbjct: 227 RIFE 230


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 250  SILYLYISKCLSSIIANAAERTPHCTFASICMSA 149
            SI+ +Y  KC+ + I+  A     C F ++ +SA
Sbjct: 2777 SIIAVYFDKCIEAFISMLAILKAGCCFLALDVSA 2810


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 24  NVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMYTADIQID 167
           N+QE I  + C  S  + E T  CA+  +   ++ V        IQ+D
Sbjct: 192 NMQELIRKTICEKSDKAIEKTFLCAQLFKTFCEDGVLQTFQPGFIQLD 239


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 146 HRRHTNRRKGAMRRAFG 196
           H RH  ++KG  +R FG
Sbjct: 503 HHRHHKKKKGGNKRVFG 519


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 243 RIENKFFYYYDQCADIAKPDRL 308
           R E+ F YY    AD++K DR+
Sbjct: 210 RAEDNFDYYSTGMADLSKDDRI 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,164
Number of Sequences: 5004
Number of extensions: 46596
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)