Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14g07
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.4  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 267 YYDQCADIAKPDRLPDDDGACCHHFIFDAQR 359
           +Y++ A   +PDR   D G      +FD  R
Sbjct: 246 HYERRATPPQPDRTSKDQGTIGESEVFDTTR 276


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -1

Query: 338 MVTARTVVIGKTVGFGNVGTLII-VIKKFILYSILVH-FQMFIVNYCKRGRTHAALHLCV 165
           M+    V+      +  +  +++  I   + Y I  + F+  + +YC    TH    +  
Sbjct: 316 MIAGIVVISAGADAYPPLAAIVLGAIGSIVFYIISRYVFRSALEDYCNIVATHLVCGILG 375

Query: 164 DLYVGGVHVKENKVINHYLLSFCASGRCL 78
            + V   +V+E+  +   LL+F     CL
Sbjct: 376 SILVPFFYVQEDDDVKLVLLNFGWQMICL 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,317
Number of Sequences: 438
Number of extensions: 2963
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)