Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14g02
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeas...    28   4.9  
DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar prot...    28   4.9  
Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical p...    28   6.5  

>AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical
           protein ZK488.6 protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 514 FENYPIVNTAFINS--LIVNGFKYNQVDDHVVCEYCESRNKKLV 639
           +   P    AF++   ++V     NQVDD V C Y + R ++++
Sbjct: 143 YHTLPSAGAAFVHEDQIVVTLTAENQVDDTVYCRYYDCRRREIM 186


>Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical
           protein W04G3.4 protein.
          Length = 588

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 246 ISNIFEYEFVVLEHNLSTVHVINAETKTKLGHINVSLNQNDPNV 377
           +SNI  Y  V+  HN  T+  +N   KT   ++ + L  +  N+
Sbjct: 484 VSNIHSYVLVIQNHNNFTIKDVNLSLKTNDKNVIIRLQDSVNNL 527


>U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 35 protein.
          Length = 821

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 466 NIAEHVFDMLLERHGSFENYPIVNTAF--INSLIVNGFKYNQVDDHVVCEYCESRN 627
           NIA ++   +LE    F N   V++AF  I+SL+ +  K +  D H   E+ + +N
Sbjct: 452 NIASYMIQNMLEEETVFRNQDDVDSAFSLISSLLKDQEKQSS-DSHETEEFADEQN 506


>DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar protein
           sorting factor protein.
          Length = 826

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 466 NIAEHVFDMLLERHGSFENYPIVNTAF--INSLIVNGFKYNQVDDHVVCEYCESRN 627
           NIA ++   +LE    F N   V++AF  I+SL+ +  K +  D H   E+ + +N
Sbjct: 457 NIASYMIQNMLEEETVFRNQDDVDSAFSLISSLLKDQEKQSS-DSHETEEFADEQN 511


>Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical
           protein F26D2.16 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 75  DLLKNISFSHSKCAPFKLQNYTVLKRLSNGFIDKSV--DVGSISELQKFNFKINRLTSYI 248
           D L +  FS+  C    +    V++ + N  + K+V  DV SIS+   F     R+T  +
Sbjct: 318 DRLLSYKFSYKGCGRM-VSKEEVIEHIINLPLRKNVELDVKSISDSPSFYLIRMRITGLL 376

Query: 249 SNIFEYEFVV 278
           S  FE  F V
Sbjct: 377 SKPFEISFKV 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,985
Number of Sequences: 27780
Number of extensions: 252638
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)