Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14f21
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 113 4e-27
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 108 2e-25
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 0.42
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 1.7
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 3.0
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 3.0
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 24 5.2
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 23 6.9
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 23 6.9
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 23 6.9
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 23 9.1
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 113 bits (273), Expect = 4e-27
Identities = 55/77 (71%), Positives = 62/77 (80%)
Frame = +2
Query: 59 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 238
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 239 FKTNFGGGKSTGFALIY 289
+T+FGGG+STGFALIY
Sbjct: 60 LRTHFGGGRSTGFALIY 76
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 108 bits (259), Expect = 2e-25
Identities = 50/77 (64%), Positives = 60/77 (77%)
Frame = +2
Query: 59 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 238
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 239 FKTNFGGGKSTGFALIY 289
+T++GGG++TGFALIY
Sbjct: 60 LRTHYGGGRTTGFALIY 76
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 0.42
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 176 EIREKLAKMYKVTPDVVFVFGFKTNFGG 259
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 1.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 94 FASANSRCSFTHXELFSII 38
F+S SRCSFT E+ SI+
Sbjct: 776 FSSVISRCSFTDFEINSIL 794
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 3.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 258 PPKFVLKPNTNTTSGVTLYILASFS 184
PPK LKP+ +T+ ++ Y LA S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 3.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 186 SRISVLLTVGFPGCKTSQTICLRANNL 106
SRI + ++G K Q++CLR N +
Sbjct: 48 SRIQSMASLGLERFKNLQSLCLRQNQI 74
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 23.8 bits (49), Expect = 5.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 235 EYEHYIGSNLVHFGELLTDLGLAD 164
+YE + G VHF LT+ G+ +
Sbjct: 985 DYESHHGEGNVHFNVTLTEAGMKE 1008
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 23.4 bits (48), Expect = 6.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 54 SK*VKEQRLFALANS*PTDCWRASRWFA 137
+K VK++R+ AL N WR W A
Sbjct: 149 TKIVKQERILALYNGFEATMWRHVVWNA 176
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 23.4 bits (48), Expect = 6.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 262 ATSEVCLETEYEHYIGSNL 206
A SE LE EYE +GS L
Sbjct: 1297 AASENILEIEYEDEVGSGL 1315
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 23.4 bits (48), Expect = 6.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 227 FVFGFKTNFGGGKSTGFALI 286
F+FG TN+ G + G+A I
Sbjct: 232 FIFGDFTNYSGWSNMGWAFI 251
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 147 CKTSQTICLRANNLLVMNLRVRIVAVP 67
C T TICL NN ++ V +P
Sbjct: 362 CTTRATICLLQNNSIIAFCNYNQVKLP 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,176,691
Number of Sequences: 5004
Number of extensions: 20564
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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