Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14f21
(291 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 109 5e-25
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 105 6e-24
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 105 6e-24
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 29 0.63
01_06_0355 + 28657833-28660665,28660762-28661126 29 0.83
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 1.4
02_03_0347 - 17999780-18000592,18000656-18003019 27 1.9
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890 27 3.3
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 27 3.3
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 26 5.8
08_01_1021 + 10310634-10310679,10312880-10313757,10314404-10314640 25 7.7
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 109 bits (261), Expect = 5e-25
Identities = 49/72 (68%), Positives = 62/72 (86%), Gaps = 1/72 (1%)
Frame = +2
Query: 77 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 253
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 254 GGGKSTGFALIY 289
GGGKSTGF LIY
Sbjct: 71 GGGKSTGFGLIY 82
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 105 bits (252), Expect = 6e-24
Identities = 48/72 (66%), Positives = 61/72 (84%), Gaps = 1/72 (1%)
Frame = +2
Query: 77 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 253
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 254 GGGKSTGFALIY 289
GGGKSTGF LIY
Sbjct: 71 GGGKSTGFGLIY 82
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 105 bits (252), Expect = 6e-24
Identities = 48/72 (66%), Positives = 61/72 (84%), Gaps = 1/72 (1%)
Frame = +2
Query: 77 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 253
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 254 GGGKSTGFALIY 289
GGGKSTGF LIY
Sbjct: 71 GGGKSTGFGLIY 82
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 29.1 bits (62), Expect = 0.63
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 208 LVHFGELLTDLGLADGWFSWM*DIANHLLARQQSVGHEFASANSR 74
LV FG+ +T+L ADG W +A+H + V F+ N+R
Sbjct: 5 LVLFGDSITELSFADG--GWGAALADHFARKADVVLRGFSGYNTR 47
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 0.83
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 237 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 58
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 186 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 58
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>02_03_0347 - 17999780-18000592,18000656-18003019
Length = 1058
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 151 WM*DIANHLLARQQSVGHEFASANSRCSFTHXELFSIIRRLHARVSAKTR 2
W+ D+AN ++ QQ +G S + S T F RR R +A TR
Sbjct: 105 WLDDVANLVMTAQQRLGAGGRSFAPKASGTATTGFMSSRRRARRAAAVTR 154
>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
Length = 216
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 211 YSRCSVRIR-FQDKLRRWQVNWI 276
+ RC VR+ F KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 67 RNSDYSHSQIHDQ--QIVGAQADGLRCLTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRF 240
R+SD ++ + D+ Q VG +D R T + +QD+ E + + + R
Sbjct: 761 RSSDRTNQRDRDRNDQDVGRTSDERREKTHDREKDKQDKPKSENKNILDAKQLIDMIPRT 820
Query: 241 QDKLRRWQVNWIRFD 285
+++L + +NW +D
Sbjct: 821 KEELFAYDINWAIYD 835
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 137 DVLHPGKPTVSKTEIREKLAKMYKVTPDVVFV 232
D+L + KT +R L Y + PD +FV
Sbjct: 724 DILSIARSVCCKTSLRAALKAKYGILPDNIFV 755
>08_01_1021 + 10310634-10310679,10312880-10313757,10314404-10314640
Length = 386
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 261 PP--PKFVLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICL 121
PP P V + + +T+Y R+S LLT+ P CK+ + I L
Sbjct: 318 PPTAPPLVKEFTADYLKKITIYFWLGDERVSKLLTLLAPICKSLEDIKL 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,799,140
Number of Sequences: 37544
Number of extensions: 139610
Number of successful extensions: 412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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