Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f20
         (214 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p...    26   3.2  
AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical...    25   5.5  

>Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical
           protein K04C1.1 protein.
          Length = 307

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 47  LSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKL 142
           L + S FF R   W D   PF S   T TQ L
Sbjct: 234 LKNSSEFFERLVDWIDLLVPFASDALTLTQPL 265


>AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p450
           family protein 33C1 protein.
          Length = 497

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 32  QFKHGLSSPSSFFNRCHIWFDTPAPFFSR 118
           + KH + SP+  F + HI+     P F++
Sbjct: 195 ELKHIIDSPAEIFGKLHIFLAMNIPIFAK 223


>AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical
           protein B0205.4 protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 38  KHGLSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKL 142
           +HG+    +  NR H   DTP  ++ R   Q  K+
Sbjct: 264 RHGMDISMNSRNRIHGHVDTPIEYYKRAIQQISKI 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,498,783
Number of Sequences: 27780
Number of extensions: 84248
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)