Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f20
         (214 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   1.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   2.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   5.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    19   5.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         19   5.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   6.7  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    19   6.7  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           19   6.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   8.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   8.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   8.9  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
          protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 1.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 99 GVSNHMWHRLKNDDGDDKP 43
          G+S   WH+ +   G  KP
Sbjct: 2  GISRDHWHKRRATGGKRKP 20


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 121 IPAEERRRRVKPYVAPVEE 65
           +P  + RRRV+  +  VEE
Sbjct: 401 LPGNDARRRVEAALEAVEE 419


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 101 APFFSRYHTQTQKLGLQTPPG 163
           A  +++YH Q     +Q P G
Sbjct: 719 ANLYTKYHGQYPNTQIQNPVG 739


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTQK 139
           T APFF+R  T T K
Sbjct: 244 TFAPFFTRVVTDTIK 258


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = -2

Query: 207 LSMNGSWIFXMC--EVYPGGVCNPSFCVC 127
           LS+N S     C  +   GG C    C+C
Sbjct: 74  LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 4   GKNYSYINYTI*TWFIVAVVVLQP 75
           G+  + I  TI T    AVV+ QP
Sbjct: 207 GREVALIEQTIGTCVANAVVIEQP 230


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 5/11 (45%), Positives = 6/11 (54%)
 Frame = -2

Query: 159 GGVCNPSFCVC 127
           GG C    C+C
Sbjct: 71  GGHCEKGVCIC 81


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 5/11 (45%), Positives = 6/11 (54%)
 Frame = -2

Query: 159 GGVCNPSFCVC 127
           GG C    C+C
Sbjct: 46  GGHCEKGVCIC 56


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 50  SSPSSFFN 73
           SSPSSFF+
Sbjct: 94  SSPSSFFS 101


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 44  GLSSPSSFFNRCH 82
           G +SP SF   CH
Sbjct: 67  GPNSPGSFTAGCH 79


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 44  GLSSPSSFFNRCH 82
           G +SP SF   CH
Sbjct: 67  GPNSPGSFTAGCH 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,076
Number of Sequences: 438
Number of extensions: 1165
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)