Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14f19
(413 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 28 0.66
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 26 2.7
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 3.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 4.7
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 6.1
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 25 6.1
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 24 8.1
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 24 8.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 24 8.1
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 24 8.1
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.9 bits (59), Expect = 0.66
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -3
Query: 369 MVTARTVVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKRGRTHAALHL-CVD 193
+V ++++G + +GN+GTLI + F Y + +N + R + L D
Sbjct: 332 LVPTLSLLLGNPIPYGNLGTLI--PEPFYYYGDEYLSKAQKINIGQLNRFFSEYDLDASD 389
Query: 192 LYVGGVHVKENKVINHYLLSF 130
VH N ++ Y L F
Sbjct: 390 FLSSSVHKNNNSYLDQYFLDF 410
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 351 VVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKR 229
++ +G+ N GT ++ +I+Y + V F MF++ Y +R
Sbjct: 277 MIFNAILGWNNTGTYGSILS-YIIYWLFVAFIMFLMWYKER 316
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 3.5
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +1
Query: 7 IDNEQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMYTAD 186
I N N R + N+QE I + C S + E T CA+ + ++ V
Sbjct: 176 IVNFTSNPNRYRFYETNMQELIRKTICEKSDKAIEKTFLCAQLFKTFCEDGVLQTFQPGF 235
Query: 187 IQID 198
IQ+D
Sbjct: 236 IQLD 239
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 281 SILYLYISKCLSSIIANAAERTPHCTFASICMSA 180
SI+ +Y KC+ + I+ A C F ++ +SA
Sbjct: 2777 SIIAVYFDKCIEAFISMLAILKAGCCFLALDVSA 2810
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 177 HRRHTNRRKGAMRRAFG 227
H RH ++KG +R FG
Sbjct: 503 HHRHHKKKKGGNKRVFG 519
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 274 RIENKFFYYYDQCADIAKPDRL 339
R E+ F YY AD++K DR+
Sbjct: 210 RAEDNFDYYSTGMADLSKDDRI 231
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 24.2 bits (50), Expect = 8.1
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -3
Query: 315 GTLIIVIKKFILYSILVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVI 151
G L + K + L+ ++FI+ CK + + LC+ G H+ E + I
Sbjct: 65 GLLTLTNKSKVNEIQLISIEVFIIGICKHKFHSSTVFLCL-----GTHIMEGQYI 114
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 24.2 bits (50), Expect = 8.1
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 196 RFVCRRC--TCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTSLYFPGRS 53
+++C+RC K Y +LL+ + LP++ SLT + G S
Sbjct: 2 QYLCQRCHSLINFKDVYDD---DLLKLKNLPKSRFVQASSLTEMNESGES 48
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.2 bits (50), Expect = 8.1
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Frame = -2
Query: 190 VCRRCTCERKQSYQSL----PAELLR 125
+CR+C QSYQ L PA LL+
Sbjct: 293 ICRKCVITILQSYQQLIVDQPANLLK 318
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.2 bits (50), Expect = 8.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 298 NKKIYSLFYTCTFPNV 251
NK + F TC FPNV
Sbjct: 16 NKNVLVTFVTCGFPNV 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,679
Number of Sequences: 5004
Number of extensions: 37662
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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