Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14f19
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0984 + 33585875-33585877,33586158-33586268,33587604-33588245 31 0.36
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 29 1.5
05_03_0259 - 11161447-11161706,11161764-11164266 29 1.9
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804... 29 1.9
01_01_1125 - 8920590-8924372 29 1.9
06_01_1000 - 7778907-7780721 28 2.6
08_02_1172 + 24898290-24899141,24900864-24901328 27 5.9
05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488 27 5.9
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 27 5.9
>01_06_0984 + 33585875-33585877,33586158-33586268,33587604-33588245
Length = 251
Score = 31.1 bits (67), Expect = 0.36
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = -3
Query: 384 GIENKMVTARTVVIG--KTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKRGRTHAA 211
G++ T T + G K F +VG +I ++KK L F + + CK GR+ A
Sbjct: 60 GVKPNATTFTTAIAGFYKEERFDDVGKVIELMKKHGCGESLPVFNVRVQGLCKLGRSGDA 119
Query: 210 LHLCVDLYVGGVHVKENKVINHYLLSFCASG 118
L ++ G NH + FC G
Sbjct: 120 KALLNEMVKKGTK-PSWLTYNHLIHGFCKEG 149
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -3
Query: 300 VIKKFILYSILVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCAS 121
V+ +LY+ LV + +CK G AL VD+Y G+ V + + N L SF
Sbjct: 505 VLPNNVLYTTLVFY------FCKAGHAKEALKYFVDIYRSGL-VANSVIHNALLCSFYRE 557
Query: 120 G 118
G
Sbjct: 558 G 558
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -3
Query: 330 GFGNVGTLIIVIKKFILYSI---LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKE 163
G G + I + + + S+ + + I YC+ GRT A + ++ + GV E
Sbjct: 346 GEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSE 404
>05_03_0259 - 11161447-11161706,11161764-11164266
Length = 920
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 267 VHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGR 115
V + M I YC+RGR A + ++ G+HV V N + C GR
Sbjct: 325 VAYGMMINGYCQRGRMDDATRVRNEMRDAGIHV-NLFVYNTMINGLCKLGR 374
>04_01_0613 -
8042568-8042686,8043107-8043206,8043550-8043594,
8043691-8043770,8045082-8046322,8047077-8047507
Length = 671
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 118 SACAEAQQVMIDNFVFFHMYTADIQIDAKVQCGVRSAAFAIIDDKHLEMYKYRIENK 288
S CA + + + +M +D IDA+V C + + + D + E R+ K
Sbjct: 178 STCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEK 234
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 279 YSI-LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGRCLAR 103
YS+ L + + + CK G AL LC + G ++ N VI++ +L+ CL
Sbjct: 887 YSVDLAMYSILVEGLCKSGYLEKALDLCESMKEEG--IQPNIVIHNSVLNGLCQQGCLTE 944
Query: 102 IWR 94
+R
Sbjct: 945 AFR 947
>06_01_1000 - 7778907-7780721
Length = 604
Score = 28.3 bits (60), Expect = 2.6
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = -3
Query: 387 LGIENKMVTARTVVIG--KTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKRGRTHA 214
+GI + T T++ G K F V L+ + ++ F + YCK G+
Sbjct: 417 VGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDE 476
Query: 213 ALHLCVDLYVGGVHVKENKVINHYLLSF-CASG 118
AL + + G+H N VI + L+ F C G
Sbjct: 477 ALRILRSMDESGIH--PNNVIYNTLIDFLCKRG 507
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 322 AKPDRLPDDDGACCHHFIFDAQ 387
A D DDDG CC+H + D +
Sbjct: 113 ADSDSDDDDDGDCCYHHLQDQE 134
>05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488
Length = 665
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 196 RFVCRRCTCERKQSYQSLPAELLR 125
RF+C C+C + SY ++ A LL+
Sbjct: 2 RFLCDYCSCVFRGSYSTVKAHLLK 25
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 27.1 bits (57), Expect = 5.9
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = -2
Query: 307 DHSNKKIYSLFYTCTFPNVYRQLLQTRPNARRIAPL-RRFVCRRCTCERKQSYQSLPAEL 131
DH N K+YS F + ++R + + + PL RR+ CE +++P E
Sbjct: 179 DHPNPKLYSSFLSVALKPLFRVTRRVDELSAVLEPLFRRY------CEPLGDLKAVPDEG 232
Query: 130 LRKRTLPRTNMAMTHSLTSLY-FPGRSARD 44
+++R + +L + P R++ D
Sbjct: 233 MKRRLFEHVQSHLAVALNETFNVPMRASMD 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,799,071
Number of Sequences: 37544
Number of extensions: 238279
Number of successful extensions: 797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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