Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14f19
(413 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48638-8|CAA88568.1| 237|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z50070-4|CAA90394.2| 172|Caenorhabditis elegans Hypothetical pr... 28 3.1
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 28 3.1
U97009-9|AAC69027.1| 225|Caenorhabditis elegans Hypothetical pr... 27 5.4
U50199-2|AAP46272.1| 169|Caenorhabditis elegans Pharyngeal enha... 27 5.4
U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal enha... 27 5.4
AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal en... 27 5.4
Z81038-17|CAB76409.1| 381|Caenorhabditis elegans Hypothetical p... 27 7.1
AL032656-5|CAB76732.1| 381|Caenorhabditis elegans Hypothetical ... 27 7.1
Z81517-5|CAB04212.1| 685|Caenorhabditis elegans Hypothetical pr... 26 9.4
Z70306-2|CAA94323.2| 785|Caenorhabditis elegans Hypothetical pr... 26 9.4
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 26 9.4
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 26 9.4
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 26 9.4
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical... 26 9.4
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ... 26 9.4
AF125963-3|AAD14744.2| 356|Caenorhabditis elegans Serpentine re... 26 9.4
AF000417-1|AAC39118.1| 785|Caenorhabditis elegans high-affinity... 26 9.4
>Z48638-8|CAA88568.1| 237|Caenorhabditis elegans Hypothetical
protein ZK892.6 protein.
Length = 237
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 130 LRKRTLPRTNMAMTHSLTSLYFPGRSARDCWFL 32
L+K P+TN M H L + G+S++ C F+
Sbjct: 21 LKKGNFPKTNDGMQHDLVNDVLGGKSSKYCPFI 53
>Z50070-4|CAA90394.2| 172|Caenorhabditis elegans Hypothetical
protein F43G6.3 protein.
Length = 172
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 119 DVASHEYGDDAQFDVIIFS 63
D++ +E GDDA FDV+I S
Sbjct: 11 DLSDNELGDDASFDVLISS 29
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -3
Query: 357 RTVVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFI---VNYCK 232
R ++G TV F TL+ VI ILY+ + H Q + V++C+
Sbjct: 16 RVALVGVTVSFA--ATLVCVIAAPILYNYMQHMQSVMQSEVDFCR 58
>U97009-9|AAC69027.1| 225|Caenorhabditis elegans Hypothetical
protein T19H12.2 protein.
Length = 225
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 119 DVASHEYGDDAQFDVII 69
D++ +E GDDA FDV+I
Sbjct: 66 DLSDNELGDDASFDVLI 82
>U50199-2|AAP46272.1| 169|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform b protein.
Length = 169
Score = 27.1 bits (57), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Frame = -2
Query: 307 DHSNKKIYSLFYTCTFPNV------YRQLLQT--RPNARRIAPLRRFVCRRCTCERK 161
D KKI + Y P + Y++L+ R N +IAP R F RC C +K
Sbjct: 35 DKEKKKISFVRYNPDIPQIVTSFKGYQKLMYQGYRYNIYQIAPERNFKSWRCVCAKK 91
>U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform a protein.
Length = 427
Score = 27.1 bits (57), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Frame = -2
Query: 307 DHSNKKIYSLFYTCTFPNV------YRQLLQT--RPNARRIAPLRRFVCRRCTCERK 161
D KKI + Y P + Y++L+ R N +IAP R F RC C +K
Sbjct: 35 DKEKKKISFVRYNPDIPQIVTSFKGYQKLMYQGYRYNIYQIAPERNFKSWRCVCAKK 91
>AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal
enhancer binding protein-1 protein.
Length = 425
Score = 27.1 bits (57), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Frame = -2
Query: 307 DHSNKKIYSLFYTCTFPNV------YRQLLQT--RPNARRIAPLRRFVCRRCTCERK 161
D KKI + Y P + Y++L+ R N +IAP R F RC C +K
Sbjct: 33 DKEKKKISFVRYNPDIPQIVTSFKGYQKLMYQGYRYNIYQIAPERNFKSWRCVCAKK 89
>Z81038-17|CAB76409.1| 381|Caenorhabditis elegans Hypothetical
protein Y106G6E.1 protein.
Length = 381
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 304 HSNKKIYSLFYTCTFPNVYRQLLQTRPN 221
H N +LF T F NVYR + QT N
Sbjct: 23 HLNLHHMNLFATGAFSNVYRGVAQTESN 50
>AL032656-5|CAB76732.1| 381|Caenorhabditis elegans Hypothetical
protein Y106G6E.1 protein.
Length = 381
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 304 HSNKKIYSLFYTCTFPNVYRQLLQTRPN 221
H N +LF T F NVYR + QT N
Sbjct: 23 HLNLHHMNLFATGAFSNVYRGVAQTESN 50
>Z81517-5|CAB04212.1| 685|Caenorhabditis elegans Hypothetical
protein F28B1.5 protein.
Length = 685
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 77 RQTVRHRHIRARQRPLAQKLSR**LITLFSFTCTPPTYKSTQRCNAACVRP 229
R +V + I+ RP+ K + + +FS + P Y+S Q + C+ P
Sbjct: 350 RPSVFYDSIKCTMRPICSKYDQD--LVIFSMSHDPIVYRSGQTSDIRCLPP 398
>Z70306-2|CAA94323.2| 785|Caenorhabditis elegans Hypothetical
protein C06G8.2 protein.
Length = 785
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 284 INFFITMINVPTLPNPTV--FPMTTVRAVTILFSMPNVLFNVL 406
++FF+ I V NPT+ PM +TI+ ++P+ FNVL
Sbjct: 390 VSFFVCGI-VQLFVNPTLPYIPMANEAHLTIINTIPSCDFNVL 431
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 314 PTLPNPTVFPMTTVRAVT 367
PT P PT +P+TTV ++
Sbjct: 462 PTTPGPTFYPVTTVSTMS 479
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 314 PTLPNPTVFPMTTVRAVT 367
PT P PT +P+TTV ++
Sbjct: 462 PTTPGPTFYPVTTVSTMS 479
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 314 PTLPNPTVFPMTTVRAVT 367
PT P PT +P+TTV ++
Sbjct: 462 PTTPGPTFYPVTTVSTMS 479
>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Frame = -2
Query: 346 HREDGRVWQ---CRHIDHSNKKIYSLFYT----CTFPNVYRQ 242
HR D R W C H S ++++ FYT P +YRQ
Sbjct: 1283 HRSDKREWMSTTCNHAMLSVVEVFTQFYTQLSVYALPMIYRQ 1324
>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Frame = -2
Query: 346 HREDGRVWQ---CRHIDHSNKKIYSLFYT----CTFPNVYRQ 242
HR D R W C H S ++++ FYT P +YRQ
Sbjct: 1283 HRSDKREWMSTTCNHAMLSVVEVFTQFYTQLSVYALPMIYRQ 1324
>AF125963-3|AAD14744.2| 356|Caenorhabditis elegans Serpentine
receptor, class h protein10 protein.
Length = 356
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 118 TLPRTNMAMTHSLTSLYFP-GRSARDCWFLSCCVARYQS 5
T P N A + L S++FP S RD FLS +R+QS
Sbjct: 313 TRPLLNFARS-KLHSIFFPRNMSIRDVSFLSSSQSRHQS 350
>AF000417-1|AAC39118.1| 785|Caenorhabditis elegans high-affinity
peptide transporter protein.
Length = 785
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 284 INFFITMINVPTLPNPTV--FPMTTVRAVTILFSMPNVLFNVL 406
++FF+ I V NPT+ PM +TI+ ++P+ FNVL
Sbjct: 390 VSFFVCGI-VQLFVNPTLPYIPMANEAHLTIINTIPSCDFNVL 431
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,434,985
Number of Sequences: 27780
Number of extensions: 224132
Number of successful extensions: 696
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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