Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f18
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   6.5  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    25   6.5  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    24   8.6  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    24   8.6  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    24   8.6  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    24   8.6  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   8.6  

>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 243 FGVPMTGFFIGKFLDDQETLRMTSFRD 323
           F VP++   +  +LDD+   R   FRD
Sbjct: 303 FNVPLSERIVECYLDDENRWRFLRFRD 329


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 328 DLSRKLVILKVSWSSRNLPMKNPVIGTPNQMKRGVMP 218
           D+ R   ILK    SR +    P I  P Q K G+MP
Sbjct: 136 DMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMP 172


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 178 VESSTDQSIKWPSSASLLASFGLVFR*QGSS 270
           +ESS+      PS++ LL SF   F   GSS
Sbjct: 327 IESSSSPLRSGPSTSGLLDSFTSAFHTSGSS 357


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = +1

Query: 19  PIDFSSFVILNKYLG*YIPVYGVVTVPASESCEHSLSHH----KHYAYFS*LEPHSQVES 186
           P DF S  I  +YL  + P+Y        ++   +   H    +H   FS  E       
Sbjct: 249 PEDFDSLRIFARYLVGFAPLYRTDDEKVIKTLNVTRLPHLVAIRHGVAFSYSERSVSAMR 308

Query: 187 STDQSIKWPS 216
           +T Q IKW S
Sbjct: 309 NTFQLIKWAS 318


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 49  NKYLG*YI-PVYGVVTVPASESCEHSLSHHKHYAYFS*LEPHS 174
           NK +  YI PV         +S E + +  ++YAYFS  E HS
Sbjct: 293 NKKIFQYIEPVEHENDAVIEDSAEKTAALARYYAYFSEWEQHS 335


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 223 MPKMAILYFDLLSFPLASVVPVKKNKRNAYG 131
           + K+AI +FD     +A  +PVKK K +A G
Sbjct: 25  LSKLAISFFDQKKNKMADSIPVKK-KGSAKG 54


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 178 LASVVPVKKNKRNAYGGKDYAHKIP 104
           L  ++P  ++    YGG + A K+P
Sbjct: 636 LEGIIPALESSHAVYGGMELAKKLP 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,230
Number of Sequences: 5004
Number of extensions: 40196
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)