Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f17
         (430 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065750-1|BAC05970.1|  309|Homo sapiens seven transmembrane hel...    29   8.8  

>AB065750-1|BAC05970.1|  309|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
 Frame = +3

Query: 72  MANTSNITPDIIVNAQINSEDENVLDFIIEDEYYLKKRGVGAHIIKVASSPQLR--LLYK 245
           MAN +N+T  I++    N + + ++  +    Y     G    ++ + +SP LR  + + 
Sbjct: 1   MANRNNVTEFILLGLTENPKMQKIIFVVFSVIYINAMIGNVLIVVTITASPSLRSPMYFF 60

Query: 246 NAYSAVSCGNYSIL--CNLVQNGEYDLNAIMFN 338
            AY +     YS +    L+ +  Y+   I+FN
Sbjct: 61  LAYLSFIDACYSSVNTPKLITDSLYENKTILFN 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,736,986
Number of Sequences: 237096
Number of extensions: 954181
Number of successful extensions: 1700
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)