Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14f14
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 28 1.0
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.3
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 27 2.3
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 2.3
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 26 3.1
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 3.1
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 4.1
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 7.2
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 7.2
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 25 9.5
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +1
Query: 22 NGDTRTECERRSHYGT--LN-TLKTSSRSLEELRPIKKEELNRLMNEIYETV 168
+G +E +R S++G +N T + S R+ EE+R + ++LN +N + TV
Sbjct: 550 SGRNSSESDRVSYFGLAPVNATTQDSERNGEEIRRLASKQLNVPVNNNFRTV 601
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/78 (20%), Positives = 36/78 (46%)
Frame = +1
Query: 184 MDENRPGCFPTENSDGSTSEESVKITRNLTEKRKNYVRRVSSRVAYLDKKPITQKYRHQT 363
+D+ G P+ + + S SE +++++ ++ K+ R + KYR +
Sbjct: 52 IDKMNVGPHPSHSENASDSETTLEVSPDINPKKNEKFDFYGWRSLFE-----LIKYRKDS 106
Query: 364 SVCSYKPDAPENQYSTFR 417
+CS +P YS+++
Sbjct: 107 DMCSSRPSFSIQAYSSYK 124
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 2.3
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 91 SRSLEELRPIKKEEL--NRLMNEIYETVTAACNMDENRPGCFPTENSDGSTSEESVKITR 264
SR+ + IK E L +R +NE+Y +C DEN C + S +E K
Sbjct: 107 SRAYAKRMEIKPEYLLPDRHINEVY----VSCGRDENLTSCIIEHCNVYSEAEFFSKFPA 162
Query: 265 NLTEKRKN 288
+ KRK+
Sbjct: 163 GIPTKRKD 170
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 121 KKEELNRLMNEIYETVTAACNMDENRPGCFPTE 219
KK +L + + Y + CN D + G PTE
Sbjct: 247 KKSKLLSINSSCYSNIVRFCNSDHHEIGKLPTE 279
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 3.1
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Frame = +1
Query: 358 QTSVCSYKPDAPENQYSTFRS--------WKSFRASQTNLPKLRMDSLDSKCNLTDSCGN 513
QT++ Y A +NQ +T S WKSF T +L + +DSK T +
Sbjct: 2 QTAMNKYVETAFQNQKTTLTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTDLE 61
Query: 514 LLTGDLDG 537
L L+G
Sbjct: 62 PLANKLEG 69
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 67 TLNTLKTSSRSLEELRPIKKEELNRLMNEIYETVTAACNMDENRPGCFPTENSDGSTSEE 246
TLN L L +++EE R N IY+ N E + TE+ + TS+
Sbjct: 635 TLNLLDHGCSELHHRLKLQREEYERQQNHIYKLSDRISNFREK---AWSTEHLEHLTSDM 691
Query: 247 SV 252
S+
Sbjct: 692 SM 693
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 106 ELRPIKKEELNRLMNEIYETVTAACNMDENRPGCFPTENSDGSTSEES 249
EL P+K+ +++R+ + + + C+M+ + PT + SEES
Sbjct: 596 ELDPVKRYDIHRVFADNWINDISMCHMENGKVIHSPTHVHNLVASEES 643
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +1
Query: 127 EELNRLMNEIYETVTAACNMDENRPGCFPTENSDGSTSEESVKITRNLTEK 279
EE + E + ++ D+ RP + D S++EESV + +++++
Sbjct: 863 EEARNALTERLQAISDDWEEDDTRPVFQGANDGDISSNEESVYLPEDISDE 913
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 211 PTENSDGSTSEESVKITRNLTEKRKNYVR 297
P E +DGS + ++N + K+K YVR
Sbjct: 543 PPELNDGSRQHRPSRPSKNPSLKKKKYVR 571
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 229 GSTSEESVKITRNLTEKRKNYVRRVS 306
G + +++ R EKR NYVR+V+
Sbjct: 178 GRGGQSALRFARLRDEKRHNYVRKVA 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.127 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,091
Number of Sequences: 5004
Number of extensions: 44496
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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