Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f12
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    53   1e-08
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    51   6e-08
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    47   9e-07
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    27   0.80 
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   0.80 
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    27   0.80 
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    27   0.80 
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   4.3  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    23   9.8  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 52.8 bits (121), Expect = 1e-08
 Identities = 31/79 (39%), Positives = 38/79 (48%)
 Frame = +3

Query: 3   AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           AA VDVEP W  +FAKALEG ++++L+ NIGSG                           
Sbjct: 33  AANVDVEPIWATIFAKALEGKDLKELLLNIGSGA--GAAPVAGGAAAPAAADGEAPAEEK 90

Query: 183 XXXXXXXXSDDDMGFGLFD 239
                   SD+DMGFGLFD
Sbjct: 91  EEAKEEEESDEDMGFGLFD 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 50.8 bits (116), Expect = 6e-08
 Identities = 30/79 (37%), Positives = 37/79 (46%)
 Frame = +3

Query: 3   AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           AA VDVEP W  +FAKALEG ++++L+ NIGS                            
Sbjct: 33  AANVDVEPIWATIFAKALEGKDLKELLLNIGSAA-AAPAAGGAGAPAAAAGGEAAAEEQK 91

Query: 183 XXXXXXXXSDDDMGFGLFD 239
                   SD+DMGFGLFD
Sbjct: 92  EEAKEEEESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 46.8 bits (106), Expect = 9e-07
 Identities = 28/79 (35%), Positives = 36/79 (45%)
 Frame = +3

Query: 3   AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           A  V+VEP W  +FAKALEG ++++L+ NIGS                            
Sbjct: 33  AGNVEVEPIWATIFAKALEGKDLKELLLNIGSA--GAASAPTAAGAGAAAPAEAAEEEKK 90

Query: 183 XXXXXXXXSDDDMGFGLFD 239
                   SD+DMGFGLFD
Sbjct: 91  EEAKEEEESDEDMGFGLFD 109


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 207 SDDDMGFGLFD 239
           SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 207 SDDDMGFGLFD 239
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 207 SDDDMGFGLFD 239
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 207 SDDDMGFGLFD 239
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 78  GHGH*CLPRLWRTDL 34
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 320 LIKSVSYNIKALQ*TKWNIFISS 252
           L K V Y  KA+  T WN F SS
Sbjct: 28  LRKDVFYWTKAIAYTTWNFFDSS 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,604
Number of Sequences: 5004
Number of extensions: 10001
Number of successful extensions: 37
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)