Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f12
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    50   4e-07
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342...    27   5.1  
07_03_0035 - 12677942-12678568                                         26   6.7  
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     26   6.7  
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    26   6.7  
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           26   6.7  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 31/79 (39%), Positives = 35/79 (44%)
 Frame = +3

Query: 3   AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           AA + VE YWPGLFAK LE  +V DLI ++GSG                           
Sbjct: 33  AANIKVEAYWPGLFAKLLEHRSVDDLILSVGSG-GGAAPVAAAAAPAAGGGAAAAPAAEE 91

Query: 183 XXXXXXXXSDDDMGFGLFD 239
                   SDDDMGF LFD
Sbjct: 92  KKEEAKEESDDDMGFSLFD 110


>01_06_1007 -
           33733500-33733604,33733837-33733917,33734191-33734238,
           33734364-33734549,33735148-33735678,33735823-33735864,
           33735945-33736065,33736200-33736281,33737169-33737227,
           33738492-33738564,33738694-33738913
          Length = 515

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 37  VCSPKPWKASMSVT*SPTSALEWVLLRPLV 126
           VC  +P         SP  +L WVLLRP++
Sbjct: 482 VCKLRPTALLADGVASPLRSLAWVLLRPIM 511


>07_03_0035 - 12677942-12678568
          Length = 208

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 31  GQVCSPKPWKASMSVT*SPTSALEWVLLRP 120
           G V SP  + A M    SPT+A  W LLRP
Sbjct: 96  GVVASPARFGAVMLA--SPTAANRWFLLRP 123


>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 207 SDDDMGFGLFD 239
           SDDDMGF LFD
Sbjct: 103 SDDDMGFSLFD 113


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 207 SDDDMGFGLFD 239
           SDDDMGF LFD
Sbjct: 296 SDDDMGFSLFD 306


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 207 SDDDMGFGLFD 239
           SDDDMGF LFD
Sbjct: 104 SDDDMGFSLFD 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,304,073
Number of Sequences: 37544
Number of extensions: 72262
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)