Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f12
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    63   4e-11
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    60   5e-10
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   1.2  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 34/79 (43%), Positives = 41/79 (51%)
 Frame = +3

Query: 3   AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           AA V+ EPYWPGLFAKALEG++V++LIT++ SG                           
Sbjct: 34  AANVEFEPYWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETK 92

Query: 183 XXXXXXXXSDDDMGFGLFD 239
                   SDDDMGFGLFD
Sbjct: 93  KKEEPKEESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 33/79 (41%), Positives = 40/79 (50%)
 Frame = +3

Query: 3   AAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           AA V+ EP WPGLFAKALEG++V++LIT++ SG                           
Sbjct: 34  AANVEFEPNWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETK 92

Query: 183 XXXXXXXXSDDDMGFGLFD 239
                   SDDDMGFGLFD
Sbjct: 93  KKEEPKEESDDDMGFGLFD 111


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 207 SDDDMGFGLFD 239
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 207 SDDDMGFGLFD 239
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 207 SDDDMGFGLFD 239
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,145,859
Number of Sequences: 27780
Number of extensions: 56075
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)