Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f11
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   138   4e-34
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.37 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.6  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   2.6  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.5  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   4.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   4.6  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   6.1  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  138 bits (335), Expect = 4e-34
 Identities = 73/155 (47%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
 Frame = +3

Query: 84  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEEADEGTD 260
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  QG D+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 261 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKV 440
              E+  ++V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    
Sbjct: 60  EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117

Query: 441 MKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDG 545
           +K IL  FK+  F+ GESMD D MV +M YR+ DG
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DG 151


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 279 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 425
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 121  ISSPVIMSL*IFILMDWRRLKII 53
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 143 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 33
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 186 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 329
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 555 VFAYHQSLYIPSWQPC-HHN 499
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 575 LKNIMIGYLRTIKVSIFHHGNHAITIHGLPSKELKFLKPAEDVFHYFVHV 426
           ++ +MI   R IK +I H     + ++ +    L+   P  D +H   HV
Sbjct: 243 IEGVMINTTRIIKHAILHDMPIVLVLNKVDRLILELRLPPNDAYHKLRHV 292


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 299 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 201
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 479 ELKFLKPAEDVFHYFVHVCFKYFNLVR 399
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,132
Number of Sequences: 5004
Number of extensions: 48367
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)