Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14e24
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 57 1e-09
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 42 5e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 40 2e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 34 0.010
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 31 0.095
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 31 0.095
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.13
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 29 0.22
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 29 0.29
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 28 0.67
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 2.0
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 2.7
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 6.2
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 6.2
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 24 8.2
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 24 8.2
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 24 8.2
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/54 (57%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +1
Query: 253 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVR 411
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKR 80
Score = 24.6 bits (51), Expect = 6.2
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 253 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 405
FA + +GG + A S V ++ + L S + ++++ G+VD +
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVY 182
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 41.5 bits (93), Expect = 5e-05
Identities = 16/28 (57%), Positives = 26/28 (92%)
Frame = +1
Query: 268 LAGGISAAVSKTAVAPIERVKLLLQVQH 351
L+GG++A VS+TAV+P+ER+K++ QVQ+
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN 52
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 39.5 bits (88), Expect = 2e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 259 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRI 414
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ G+ A I
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHI 69
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 33.9 bits (74), Expect = 0.010
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 241 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLL 339
DP F++GGI+ VS+T AP++R+K++L
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML 155
Score = 27.1 bits (57), Expect = 1.2
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 265 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 360
+LAGG++ +V++ + P++ +K +Q +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 30.7 bits (66), Expect = 0.095
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 244 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ 348
PV + +++G IS + V P+E V++ LQ+Q
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ 143
Score = 27.5 bits (58), Expect = 0.88
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 250 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQ 348
+F KDFLA G+S V++ V P + VK+ LQ Q
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQ 48
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 30.7 bits (66), Expect = 0.095
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 268 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVD 399
++GG+S A++ + P++ VK LLQ + S I ++ KG +D
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLD 251
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 30.3 bits (65), Expect = 0.13
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 202 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQ 342
V +T +N SN P + F+AGG++ + A AP++ VK LQ
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 29.5 bits (63), Expect = 0.22
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 265 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAF 405
FL+GG++A + T P E +K Q+Q ++K + + YK + AF
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAF 74
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.29
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 268 LAGGISAAVSKTAVAPIERVKLLLQVQHVS 357
LAGGIS+ + + +AP + +K+ +Q+ S
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS 50
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.9 bits (59), Expect = 0.67
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 259 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 348
KD +AGG + S VAP++ VK Q Q
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 102 YEITPNLLFKNQELVFRDPPSACAATPTSTY 194
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 2.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 407 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 300
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 114 PNLLFKNQELVFRDPPSACAATPT 185
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 6.2
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 82 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 204
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 24.2 bits (50), Expect = 8.2
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Frame = +1
Query: 163 PRVPQLPPRHIHLVKIT*SNKMSNLADPVAFAKDFLAG----GISAAVSKTAVAPI--ER 324
P PQ P ++I ++ +PV FA L + T P
Sbjct: 96 PTTPQTPKTPKRTIQIVTPKSLNRTCNPVPFATRLLQSTPHRQLFPPTPSTPSTPSYNST 155
Query: 325 VKLLLQVQHVSKQIAADQRYKGIVDAFVR 411
KL L+ + S + + K IV++F R
Sbjct: 156 AKLSLRKSYRSAGVVGRENEKSIVESFFR 184
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 24.2 bits (50), Expect = 8.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 132 NQELVFRDPPSACAATPTSTYSPSEDHIIEQNVEP-RRSGR 251
N EL PS+ AATPT + S +I + RSG+
Sbjct: 75 NDELAESSKPSSGAATPTRSAPKSSAGLINSGLRALDRSGK 115
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 377 WSAAICLLTCCTWSSSLTRSMGATAVLETAAEIPPA 270
WSA +CL+ C SL + E A I PA
Sbjct: 152 WSAMVCLMAACRNGPSLLGLRFLAGIFE--ASITPA 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,449
Number of Sequences: 5004
Number of extensions: 31760
Number of successful extensions: 109
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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