Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e20
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   3.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   4.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    24   7.7  
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    24   7.7  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    24   7.7  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 115 ETGYCIKCYQCNSEQDKNCG 174
           ++ YC+KC+Q    +  +CG
Sbjct: 398 QSHYCLKCFQVKPPRSYHCG 417


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 196  PPVECNTQDSINFNTLYLRNILPVEVLNSVTGAPRYC 306
            PPV    +DSI    + L++++ + +L+  T A R C
Sbjct: 981  PPVYRKKEDSIYLLDMCLQSVVNIPLLSIKTTAQRNC 1017


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 392 TTRQVCWESLGLTSKQVRTT 333
           T+R   WE LGL++  V TT
Sbjct: 575 TSRAKVWEKLGLSTVDVSTT 594


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 349 LDVNPNDSQHTCRVVE 396
           +DV P+DS+H   VVE
Sbjct: 184 IDVQPDDSRHVVSVVE 199


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 255 VAQVERIEVNRILGVAFYWGFGALERVPAVLILFTVTLVALDAIAC 118
           +  +  +  N IL +    GFG +E   + + +FTV    ++ I C
Sbjct: 150 ITPITSLSANIILNMLPVGGFGEIEYWLSSIKVFTVAAFIVNGILC 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.131    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,545
Number of Sequences: 5004
Number of extensions: 32232
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)