Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14e20
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239... 29 1.8
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 28 3.2
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 27 4.2
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 27 4.2
03_01_0558 + 4155220-4155642,4156292-4156348,4157030-4157165,415... 26 9.7
02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180... 26 9.7
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 26 9.7
>08_02_1417 -
26922775-26922986,26923102-26923291,26923816-26923928,
26924032-26924112,26925329-26926661
Length = 642
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -1
Query: 169 SSYPVHCYIGST*CNSLFRIALVEQRRRMLHFLP 68
+ + ++CYIGS+ + + +VE+ RR+ + +P
Sbjct: 137 NGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP 170
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 215 PRIRLTSIRSTCATFCLSKS*TALRELLDTVTRSS*RAELLSVLAWMST 361
P+ RL S+R F L +S T+ ++ + SS + + L WM T
Sbjct: 1038 PQSRLHSVREELLQFLLEESKTSSTDVYKSFKSSSEKCPNICYLLWMDT 1086
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 131 SSATNVTVNRIRTAGTRSRAPNPQ*NATPRIRLTSIRST 247
+S+TN +++ ++T+G S P P N SI ST
Sbjct: 1039 NSSTNFSIDAVKTSGLNSWTPVPVTNTVRSTHSNSISST 1077
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 27.5 bits (58), Expect = 4.2
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Frame = +1
Query: 166 NCGD---PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVTGAPRYCHKI----VMK 324
NC D P + PP +CN S++F TL + + +++ V G + ++ V
Sbjct: 526 NCDDDICPVEIIHPPEDCNLNSSLSF-TLQVCRVEDIDIWGLVQGTVIHFNRARSVSVHT 584
Query: 325 SGTVVRTCL 351
SGT+ T L
Sbjct: 585 SGTISATGL 593
>03_01_0558 +
4155220-4155642,4156292-4156348,4157030-4157165,
4158378-4158514,4159509-4159632,4160111-4160568
Length = 444
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 292 APRYCHKIVMKSGTVVRTCLDVNPNDSQHTCRVVE 396
A +Y K K+ + C+ +NP H VVE
Sbjct: 352 AGQYPAKAAQKAAALAHRCVSLNPKSRPHMSAVVE 386
>02_05_0213 +
26815889-26816475,26817718-26817788,26817985-26818073,
26818910-26818991,26819089-26819204,26819290-26819451,
26819531-26819680,26819969-26820037,26820375-26820491
Length = 480
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 235 NTLYLRNILPVEVLNSVTGAPRYCHKIVMKSGTVV 339
++L LR ILP++ G C +I ++GTV+
Sbjct: 189 SSLLLRAILPIKQCGKQAGGWPRCSEIEQQAGTVI 223
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 235 NTLYLRNILPVEVLNSVTGAPRY 303
N L +++++PV N +T APRY
Sbjct: 532 NLLIIKDMVPVPSANVITRAPRY 554
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.131 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,375,427
Number of Sequences: 37544
Number of extensions: 219706
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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