Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14e20
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 28 2.9
Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 27 3.8
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 27 3.8
AF070070-1|AAC70065.1| 933|Caenorhabditis elegans MutS homolog ... 27 3.8
Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical pr... 27 5.0
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 27 5.0
DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-lik... 27 5.0
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 340 RTCLDVNPNDSQHTCRVVEL 399
R C+ +N ND Q +CR V+L
Sbjct: 221 RCCVKLNKNDKQTSCRTVDL 240
>Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical
protein F01D5.1 protein.
Length = 178
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 115 ETGYCIKCYQCNSEQDKNCGDPFKSAKPPV--ECNTQDSI 228
+ GYC KC+ SE++K C P +CN+ +++
Sbjct: 130 KNGYCNKCFYKCSEREKYCAKSCGFCTPGTCKDCNSLETL 169
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
protein F09E8.3 protein.
Length = 1369
Score = 27.5 bits (58), Expect = 3.8
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 178 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 351
P KS K N + I+FNT+ +ILP E N T G R ++++ K TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 27.5 bits (58), Expect = 3.8
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 178 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 351
P KS K N + I+FNT+ +ILP E N T G R ++++ K TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323
>AF070070-1|AAC70065.1| 933|Caenorhabditis elegans MutS homolog
protein.
Length = 933
Score = 27.5 bits (58), Expect = 3.8
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 178 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 351
P KS K N + I+FNT+ +ILP E N T G R ++++ K TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323
>Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 222 FD*LQYALPAQHSACRSLEQRY--GSS*ILSQDRHEER 329
F+ LQY L A AC LE+ Y G + I Q RH R
Sbjct: 820 FNVLQYELRAIREACMMLERGYQPGITFIAVQKRHHTR 857
>Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 222 FD*LQYALPAQHSACRSLEQRY--GSS*ILSQDRHEER 329
F+ LQY L A AC LE+ Y G + I Q RH R
Sbjct: 820 FNVLQYELRAIREACMMLERGYQPGITFIAVQKRHHTR 857
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 27.1 bits (57), Expect = 5.0
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +1
Query: 136 CYQCNSEQDKNCGDP---FKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVTGAPRY- 303
C C ++ + C +SAK CNTQ T R++L ++ + V +
Sbjct: 563 CGSCGTQYRERCTSTTNCLRSAKQTRVCNTQPCAQGTTRGKRSVLQTQISHRVKRLNGWC 622
Query: 304 CHKIVMKSGTVV 339
C + V+ G V
Sbjct: 623 CARFVLSRGVCV 634
>DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-like
protein.
Length = 1010
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 222 FD*LQYALPAQHSACRSLEQRY--GSS*ILSQDRHEER 329
F+ LQY L A AC LE+ Y G + I Q RH R
Sbjct: 828 FNVLQYELRAIREACMMLERGYQPGITFIAVQKRHHTR 865
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.131 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,692,332
Number of Sequences: 27780
Number of extensions: 196878
Number of successful extensions: 588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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