Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e19
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032...    37   0.005
02_05_0015 - 24992253-24993993,24995331-24995695                       27   4.3  
10_08_1045 - 22535516-22535593,22535681-22535756,22535843-225359...    27   5.7  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    27   5.7  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    27   7.6  
02_04_0309 - 21924042-21925580                                         27   7.6  
02_04_0043 + 19185969-19186036,19186205-19187342                       27   7.6  

>04_03_0686 +
           18701543-18701917,18702658-18702702,18703175-18703289,
           18703644-18703713,18703796-18703844,18704319-18704416,
           18704984-18705122,18705261-18705410
          Length = 346

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +1

Query: 271 AKFYNVIDFCKGLE-IAHDDILDCNWDSGSSL 363
           A+FYNV   C  +E IAHD +LDC+WD G+ +
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWDKGAGI 335


>02_05_0015 - 24992253-24993993,24995331-24995695
          Length = 701

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 305 VLKLRTTTYLIAIGTADQVYHLNEII 382
           +LKL T+TY++A+  A  + HL E I
Sbjct: 494 ILKLMTSTYIVALCQAVDLRHLEENI 519


>10_08_1045 -
           22535516-22535593,22535681-22535756,22535843-22535946,
           22536048-22536176,22536539-22536700,22537029-22537259,
           22537345-22537428,22537515-22537583,22537671-22537739,
           22537827-22537889,22537913-22538052,22538527-22539097
          Length = 591

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 274 KFYNVIDFCKGLEIAHDDILDCNWDSGSSLPFKRNYFSQAE 396
           KFYN    CKG  I  D +      SG+ L F R ++   E
Sbjct: 30  KFYNEYARCKGFSIRRDKV---KRFSGTELVFWRRFYCSCE 67


>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 199  IVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDC 339
            ++ W +F+  +   K R  + D + K + +I+    +   HDDI+ C
Sbjct: 2833 VMIWHAFRGKSADKKSRNANYDLSTKDHVIIESPYHILCGHDDIITC 2879


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 367  MVNLIR-CPNCNQVCRRAQFQDLCKNLLHCRILRSC 263
            MV+L + CP  + VCRR  F + C +L    +   C
Sbjct: 1900 MVDLTKMCPPFSAVCRRHDFLESCVDLYFSCVRSDC 1935


>02_04_0309 - 21924042-21925580
          Length = 512

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 279 EFCVRVVVHVSVLETVRVAFE*IPFNDVR 193
           E CVR VVH  VL  +  +F  +   DVR
Sbjct: 174 EMCVREVVHNGVLNLISTSFFSMDMADVR 202


>02_04_0043 + 19185969-19186036,19186205-19187342
          Length = 401

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -3

Query: 343 NCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 224
           N  + CR     D C  LL CR L  CR        C  C
Sbjct: 349 NGRRACRACGEADACVLLLPCRHLCLCRGCEAAADACPVC 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,040,880
Number of Sequences: 37544
Number of extensions: 133026
Number of successful extensions: 352
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)