Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e12
         (131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   1.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    24   3.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    23   7.3  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    22   9.7  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 44   CLKPSRRDPKVANYVMVRNDR 106
            CL PSR +PK   Y +++  R
Sbjct: 1732 CLMPSRENPKAVQYELLQKRR 1752


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 22  YSISAGNLSEALASRPESREL 84
           Y+IS  NLS     +PES+E+
Sbjct: 239 YTISHSNLSTLTLVKPESKEI 259


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 23   ILLVQETCLKPSRRDPKVANYVMVRNDRLTA 115
            I  + + CL+  +   KV N V  RN+ L A
Sbjct: 935  IFQLYDPCLEVCKTAVKVLNEVCARNENLLA 965


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 66  TRKSRITSWLGMTDSPP 116
           +R +R+ +WL  T +PP
Sbjct: 167 SRIARLAAWLAETSNPP 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,589
Number of Sequences: 5004
Number of extensions: 5361
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 24
effective length of database: 2,242,382
effective search space used: 42605258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)