Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e12
         (131 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166...    27   2.8  
06_03_0655 + 23176075-23176470,23176573-23176710,23177506-231775...    27   2.8  

>11_05_0069 -
           18814789-18815326,18815742-18816001,18816077-18816631,
           18816907-18817062
          Length = 502

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 130 SPAFGGGESVIPNHDV 83
           SPAFGGG S+ P  DV
Sbjct: 173 SPAFGGGGSLPPTRDV 188


>06_03_0655 +
           23176075-23176470,23176573-23176710,23177506-23177574,
           23177652-23177723,23177973-23178055,23178135-23178266,
           23178407-23178617,23179233-23179262
          Length = 376

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 2   LRDNLV-DILLVQETCLKPSRRDPKVANYVMVRNDR 106
           LR  L+ D+L  Q  CL     DP+  +++MV+  R
Sbjct: 337 LRSQLLKDVLKPQHGCLLARYNDPRTQSFIMVKKIR 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,701,940
Number of Sequences: 37544
Number of extensions: 42864
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 24
effective length of database: 13,892,292
effective search space used: 263953548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)