Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e12
         (131 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z71259-11|CAI46575.1|  370|Caenorhabditis elegans Hypothetical p...    25   9.8  
Z71259-10|CAA95794.4|  373|Caenorhabditis elegans Hypothetical p...    25   9.8  

>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 38  ETCLKPSRRDPKVANYVMVRNDRLTASKGGT 130
           +T  KP + DP + N V   ND LT+ K  T
Sbjct: 206 DTAQKPKQADPDLLNKVGRLNDLLTSEKQNT 236


>Z71259-11|CAI46575.1|  370|Caenorhabditis elegans Hypothetical
           protein F13G3.7b protein.
          Length = 370

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 124 AFGGGESVIPNHDVIR 77
           AFGGGE  IP  D IR
Sbjct: 180 AFGGGEKNIPVADAIR 195


>Z71259-10|CAA95794.4|  373|Caenorhabditis elegans Hypothetical
           protein F13G3.7a protein.
          Length = 373

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 124 AFGGGESVIPNHDVIR 77
           AFGGGE  IP  D IR
Sbjct: 183 AFGGGEKNIPVADAIR 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,420
Number of Sequences: 27780
Number of extensions: 32271
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 12,740,198
effective HSP length: 24
effective length of database: 12,073,478
effective search space used: 229396082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)