Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14e11
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 28 0.98
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 0.98
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 0.98
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 1.3
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 27 1.7
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 1.7
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 2.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 2.3
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 3.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 4.0
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 25 5.2
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 5.2
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.9
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 25 6.9
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 25 9.1
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.1
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 25 9.1
>SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 112
Score = 27.9 bits (59), Expect = 0.98
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 18 PTDTSIEPVYPGCDYKTVAALMMEPRDPDSFEIRHNGEFSNQFPWVD 158
PT TS PVY G ++A +PR +R E ++FP D
Sbjct: 4 PTTTSYSPVYTGNPLYDISASQSDPRQRIRKNVRFQTEV-DEFPDFD 49
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 0.98
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Frame = +1
Query: 244 PLPKDSVSDL-PSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTSSLNVSIS-- 414
P P+D+++ +TD LLL+ + ++ + + P + + II SP +SL+
Sbjct: 75 PSPRDALNITNKKSVTDNLLLSLTSSNQSTNTNLNPSSRVEIINLNSSPPNSLSSQPKHQ 134
Query: 415 ----MSTHSFPTRLKLSSKRTQIVRIPTGGTLLSAYLQK 519
T + P +LSSK + + IP +++ L K
Sbjct: 135 EFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSK 173
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.9 bits (59), Expect = 0.98
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 88 NPGTPTPLKSATMGSSPINF 147
+PGTPT LKS ++ SP +F
Sbjct: 344 DPGTPTSLKSPSLRKSPSSF 363
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 232 YFRPPLPKDSVSDLP-SFLTDFLLLTKSL 315
+ P LP+ S++D P SF +DFL L +++
Sbjct: 521 HINPRLPEGSINDYPSSFWSDFLHLNRAM 549
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 349 INDIPIIKFLFSPTSSLNVSISMSTHSFPTRLKL 450
IND+ ++K L P +LNV T S + +K+
Sbjct: 124 INDVEVVKVLLEPDFNLNVDAICETLSKDSAIKV 157
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 342 DIEMKTEMCQGLRQKEKVCKEGRKVGNGVFWQWRPKVK 229
++E + QG Q+ K KEG + + QWR VK
Sbjct: 905 ELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVK 942
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 424 HSFPTRLKLSSKRTQIVRIP 483
H P R++LSS+ QI RIP
Sbjct: 5 HGTPQRIQLSSRAIQICRIP 24
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = -2
Query: 283 GRKEGRKRSLLAMEAESK-VGSYFESCLGAITLRVWAPFS*GRSTHGN*LENSPLWRISK 107
G G +L + S GSY S GA AP S R N L N P I++
Sbjct: 106 GNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAHAPHSQNRRRRSNHLNNPPEAPITE 165
Query: 106 ES 101
S
Sbjct: 166 AS 167
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 313 LAHFCFHLYVEPINDIPIIKFLFSPTSSLNVSISMSTHSFPTRLKLSSKR 462
L F + +E + + I FL+ P N +++ +HS + LKL+ R
Sbjct: 783 LTLFAYKFPLEVVAHLYDILFLYGPGILFNFGLALLSHSQESLLKLNMDR 832
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 3.0
Identities = 24/101 (23%), Positives = 39/101 (38%)
Frame = +1
Query: 10 VLNLQTPP*NLSIPAATTKLWQL**WNPGTPTPLKSATMGSSPINFHGSISLMRMAPKPS 189
VLN TP + S+ ++T + N TP S S+PI +++ S
Sbjct: 1541 VLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSSS 1600
Query: 190 AL*HPNMTRNMTRLYFRPPLPKDSVSDLPSFLTDFLLLTKS 312
L + T L P+ SV + + +T +L S
Sbjct: 1601 VLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSS 1641
Score = 25.4 bits (53), Expect = 5.2
Identities = 24/101 (23%), Positives = 38/101 (37%)
Frame = +1
Query: 10 VLNLQTPP*NLSIPAATTKLWQL**WNPGTPTPLKSATMGSSPINFHGSISLMRMAPKPS 189
VLN TP + S+ ++T + N TP S S+PI +++ S
Sbjct: 641 VLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSS 700
Query: 190 AL*HPNMTRNMTRLYFRPPLPKDSVSDLPSFLTDFLLLTKS 312
L + T L P+ SV + + +T L S
Sbjct: 701 VLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTALNTS 741
Score = 25.4 bits (53), Expect = 5.2
Identities = 23/101 (22%), Positives = 39/101 (38%)
Frame = +1
Query: 10 VLNLQTPP*NLSIPAATTKLWQL**WNPGTPTPLKSATMGSSPINFHGSISLMRMAPKPS 189
VLN TP + S+ ++T + N TP + S+PI +++ S
Sbjct: 1997 VLNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSS 2056
Query: 190 AL*HPNMTRNMTRLYFRPPLPKDSVSDLPSFLTDFLLLTKS 312
L + T L P+ SV + + +T +L S
Sbjct: 2057 VLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSS 2097
Score = 25.4 bits (53), Expect = 5.2
Identities = 22/101 (21%), Positives = 39/101 (38%)
Frame = +1
Query: 10 VLNLQTPP*NLSIPAATTKLWQL**WNPGTPTPLKSATMGSSPINFHGSISLMRMAPKPS 189
V+N TP + S+ ++T + N TP + S+PI +++ S
Sbjct: 3257 VVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSS 3316
Query: 190 AL*HPNMTRNMTRLYFRPPLPKDSVSDLPSFLTDFLLLTKS 312
L + T L P+ SV + + +T +L S
Sbjct: 3317 VLNSSTAITSSTALNTSTPITSSSVLNSSTAITSSSILNSS 3357
>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 209 MFGCYNAEGLGAILIREI 156
+FGC++A GLG L EI
Sbjct: 64 LFGCWSANGLGIALAYEI 81
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 288 RLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLF 395
RL D + S +C +R P + + F PDLF
Sbjct: 180 RLDDPDTSVVNAAVSVICELARRAPKNYLEFAPDLF 215
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 402 CI-NLNEYSQLSNKTQAVIQANANRSDPDWRYT 497
CI ++ YS AN NR DP +RYT
Sbjct: 445 CIASIEPYSLKDEPALLEALANMNREDPSFRYT 477
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 60 YKTVAALMMEPRDPDSFEIRHNGEFSNQF 146
++ VA+ + E P EIR EFS F
Sbjct: 161 FQRVASALYEESSPLELEIRSESEFSKMF 189
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 6.9
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 307 KSLAHFCFHLYVEP--INDIPI-IKFLFSPTSSLNVSISMSTHSFPTRLKLSSKRTQI 471
+S + F H V P +++ + I LF TSS N+ S HS+ LKL +K ++
Sbjct: 175 RSPSSFRLHYMVAPDKVDESKVHIPSLFVSTSSYNLLWSDLLHSYRQPLKLYAKPEEL 232
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 241 PPLPKDSVSDLPSFLTDFLLLTKSLAHFCFHLY 339
PP+ S D+P FLT F SL+++ HLY
Sbjct: 199 PPVLSFSDDDVPGFLTHF-----SLSNYQQHLY 226
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 109 LKSATMGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTR 228
+ +A +PIN + S+++ PKPSA +PN+ TR
Sbjct: 7 IPTAIQIQNPINNNVSVTISDQLPKPSAN-NPNLLSVDTR 45
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 382 SPTSSLNVSISMSTHSFPTRLKLSS 456
SPT S NVS S S+ S PT + +S
Sbjct: 355 SPTQSENVSASASSGSSPTVSRANS 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,152
Number of Sequences: 5004
Number of extensions: 57483
Number of successful extensions: 223
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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