Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14e11
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186... 31 0.43
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510... 30 1.3
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 29 3.0
06_01_0118 + 921262-921638,921760-921857,921967-922076 29 3.0
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 29 3.0
04_04_1048 + 30411344-30411699,30411756-30411895,30412631-304126... 29 3.0
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501... 28 4.0
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398... 28 4.0
02_01_0202 + 1366149-1366594,1368444-1368444,1368616-1368743,136... 28 5.3
05_03_0240 + 10813886-10814060,10814164-10814275,10814901-108150... 27 7.0
04_03_0681 + 18628107-18629346,18630476-18630486,18630836-186309... 27 7.0
01_06_0991 + 33634334-33634454,33634656-33634939,33636250-336367... 27 7.0
12_01_0825 - 7611594-7611728,7612061-7612276,7612505-7612589,761... 27 9.2
08_02_1153 + 24724469-24724811,24724910-24725021,24725661-247258... 27 9.2
07_01_0986 - 8314733-8314783,8315895-8318381 27 9.2
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554... 27 9.2
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666... 27 9.2
01_01_0905 + 7116121-7116236,7116285-7116339,7116948-7117005,711... 27 9.2
>03_02_0874 +
12017069-12018051,12018137-12018316,12018421-12018600,
12018718-12018797,12018999-12019259,12019360-12019474,
12019631-12019855,12020840-12020849
Length = 677
Score = 31.5 bits (68), Expect = 0.43
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 124 MGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSD--LPSFLTDFL 297
MG I HG ++R+A P AL H M + L PP P S S +P+ + FL
Sbjct: 26 MGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFL 85
Query: 298 L 300
L
Sbjct: 86 L 86
>04_04_0577 +
26349205-26349669,26350384-26350482,26350887-26351064,
26351900-26352087,26352335-26352373
Length = 322
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 321 FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANR 473
F + R Y R+ ++ PF PD+ V+ I+L + S L + A I +R
Sbjct: 191 FDMDDVVRKYIRYTLNEKPFNPDVVVDLIHLRKASMLEDAEVAEILNEISR 241
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 425 TAFQQDSSCHPSERKSFGS--RLAVHCCPHICK 517
T FQ SS ++ F S +L + CCPHI K
Sbjct: 899 TPFQSFSSFRTEQKSWFPSLNKLTIGCCPHISK 931
>06_01_0118 + 921262-921638,921760-921857,921967-922076
Length = 194
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 9 GAEPTDTSIEPVYPGCDYKTVAALMMEP 92
G + T + P++PGCDY+ +M +P
Sbjct: 75 GGDRAPTEMAPLFPGCDYEHWLIVMDKP 102
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 28.7 bits (61), Expect = 3.0
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Frame = +1
Query: 94 GTPTPLKS----ATMGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKD- 258
G P L S A G++ + + S MAP PSA P + R + L PP P
Sbjct: 311 GPPVALSSSAQGAVQGTAGLMASSATSAAAMAPPPSAPSLPEVERVILELLSLPPSPLQP 370
Query: 259 --SVSDLPSFLTDFLLLTKSL---AHFCFHLY 339
S S F+ + LLL L C H++
Sbjct: 371 AMSGSTATCFICNKLLLPTDLHLVLPVCSHMF 402
>04_04_1048 +
30411344-30411699,30411756-30411895,30412631-30412696,
30413177-30413328
Length = 237
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 9 GAEPTDTSIEPVYPGCDYKTVAALMMEP 92
G + T + P++PGCDY+ +M +P
Sbjct: 68 GGDRAPTEMAPLFPGCDYEHWLIVMDKP 95
>03_05_0923 +
28848925-28849272,28849636-28849869,28849965-28850131,
28850433-28850651,28850743-28850929,28851012-28851063,
28851158-28851387,28851619-28851717,28851835-28852565,
28853004-28853519,28854140-28854398
Length = 1013
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 291 VCKEGRKVGNGVFWQWRPKVKSGHISSHVWVL 196
V EG + G G W WR KVK ++ WVL
Sbjct: 18 VAVEGDEAGKGRRW-WRVKVKLSTVAVVAWVL 48
>03_02_0875 +
12038365-12039329,12039417-12039593,12039651-12039893,
12040045-12040124,12040242-12040508,12040599-12040710,
12040757-12041071,12041357-12041366
Length = 722
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 124 MGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVS-DLPSFLTDFLL 300
MG I HG ++R+A P AL H M + L PP S S +P+ + FLL
Sbjct: 26 MGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPQAASSSPTVPAAHSPFLL 85
>02_01_0202 +
1366149-1366594,1368444-1368444,1368616-1368743,
1368943-1369039
Length = 223
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 238 RPPLPKDSVSDLPSFLTDFLLLTKSLAH 321
R P+P D +S +P F DF L L H
Sbjct: 37 RVPVPGDGLSPIPMFSVDFRLFVLILPH 64
>05_03_0240 +
10813886-10814060,10814164-10814275,10814901-10815077,
10815287-10815413,10815529-10815642
Length = 234
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 129 PHCGGFQRSRGPGVPSLELPQFCS 58
P CGG + +RG G+P + P+ S
Sbjct: 58 PGCGGAEHARGNGIPVVVFPKLKS 81
>04_03_0681 +
18628107-18629346,18630476-18630486,18630836-18630943,
18631158-18631250
Length = 483
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -3
Query: 168 HKGDRPMEIDWRTPHCGGFQRSRGPGVPSLEL 73
H+ DR M DW F GPG PSLEL
Sbjct: 97 HRSDRCMVTDW-------FVYKSGPGTPSLEL 121
>01_06_0991 +
33634334-33634454,33634656-33634939,33636250-33636795,
33643361-33643966
Length = 518
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 138 NQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLL 236
+ PW+ LPY++GA + +A D + PTL+
Sbjct: 380 SDMPWLALPYDDGASS-GALARYFDVREIPTLV 411
>12_01_0825 -
7611594-7611728,7612061-7612276,7612505-7612589,
7613170-7613372,7613935-7615723,7616322-7616450,
7616825-7616928,7618725-7618779,7618860-7618975
Length = 943
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 396 VECINLNEYSQLSNKTQAVIQANANRS 476
V C+ LNEYS N + A+ Q N+ S
Sbjct: 164 VSCLPLNEYSAHCNSSPALTQQNSEDS 190
>08_02_1153 +
24724469-24724811,24724910-24725021,24725661-24725837,
24726046-24726172,24726295-24726408
Length = 290
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 129 PHCGGFQRSRGPGVPSLELPQ 67
P CGG + +RG G+P + P+
Sbjct: 114 PGCGGAEHARGNGIPVVVFPK 134
>07_01_0986 - 8314733-8314783,8315895-8318381
Length = 845
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 216 KYDPTLLSASIAKRLRFRPSFLPY 287
+ D +L+ ++ +RL+FRP+F Y
Sbjct: 159 RLDDAVLAVAVMRRLKFRPAFSAY 182
>03_02_0085 -
5539188-5539388,5539576-5539714,5540108-5540279,
5541119-5541165,5541450-5541527,5542113-5542177,
5543108-5543155,5543393-5543473,5543586-5543783
Length = 342
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 85 WNPGTPTPLKSATMGSSPINFHGSISLMRMAPKP 186
+ P P+P AT+G+ PI HG+ L+ P+P
Sbjct: 298 YRPVDPSPSSKATIGAGPIE-HGT-PLLPYVPRP 329
>02_02_0089 -
6668179-6668316,6668386-6668565,6668648-6668729,
6669317-6669405,6669503-6669580,6670502-6670559,
6670727-6670956,6671174-6671318,6671417-6671458,
6671681-6671853
Length = 404
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 310 SLAHFCFHLYVEPINDIPIIKFLFSPTSSLNVSISMS 420
S A++ LY P+N++P+ F S ++++ + S
Sbjct: 284 STAYYRMDLYERPLNEVPVTNFFGSVMNTIHTDSAYS 320
>01_01_0905 +
7116121-7116236,7116285-7116339,7116948-7117005,
7117637-7117731,7117823-7117926,7118310-7118438,
7118845-7120633,7120849-7121054,7121865-7121949,
7122183-7122422
Length = 958
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 396 VECINLNEYSQLSNKTQAVIQANANRS 476
V C+ LNEYS N + A+ Q N+ S
Sbjct: 215 VSCLPLNEYSANCNSSPAMTQQNSEDS 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,800,033
Number of Sequences: 37544
Number of extensions: 409811
Number of successful extensions: 1164
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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