Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e11
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    28   3.6  
AF039716-3|AAB96736.1|  515|Caenorhabditis elegans Hypothetical ...    28   4.7  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine re...    27   6.2  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF016678-2|AAB66153.1|  432|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical
           protein F59A2.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 250 PKDSVSDLPSFLTDFLL-LTKSLAHFCFHLYVEPINDIP 363
           P  +V+ +P  +  F + +TK     CFHL + P++D P
Sbjct: 112 PSQAVAPVPVAMPPFTVEITKGDQRLCFHLELVPVDDQP 150


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
           protein Y57A10A.31 protein.
          Length = 1048

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 348 RLDIEMKTEMCQGLRQKEKVCKE--GRKVGNGVFWQWRPKVKSGHISSHVW 202
           +LD +++   C   +Q++ +  +   +     +F +W P  KSG I  H W
Sbjct: 583 QLDAKLRATFCMLTKQEDPIMMQDDAQYYVVRIFEEWTPNSKSGVIGVHGW 633


>AF039716-3|AAB96736.1|  515|Caenorhabditis elegans Hypothetical
           protein W03G9.2 protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 323 KCAKDFVRRRKSVRKEGRSETESFGNGGRK 234
           K  +D  RR   +RK GR+  +SF  G RK
Sbjct: 390 KTEEDVARRIAHIRKTGRAYIKSFDTGKRK 419


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 298 LLTKSLAHFCFHLYVEPINDIPIIKFLFSPTS 393
           L  K    F F L + PI+ IPIIK L +P++
Sbjct: 3   LALKLFPLFLFLLLLLPIDSIPIIKSLLNPST 34


>U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical
           protein B0361.3 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 241 PPLPKDSVSDLPSFLTDFLLLTKSLAHFCFHLYVE 345
           PPL   SV+++ S L +F  L + ++H    +Y+E
Sbjct: 349 PPLNFRSVAEVMSSLENFAYLLREISHQLLEIYLE 383


>AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical
           protein R01B10.3 protein.
          Length = 98

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 399 ECINLNEYSQLSNKTQAVIQANANRSDPDW---RYTAVRIF 512
           +C+   + +++     ++ + NA R +P W   RYTA+ +F
Sbjct: 21  DCVKQRKVAEVPQIGYSLDELNAKREEPKWRVARYTAIAMF 61


>AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein7 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +3

Query: 171 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRF----RPSFLPYRLSPSDEVLGTFLFSSL 338
           +G   +SVIA    +      L  SI K  ++    RPS++PY L  +++++  F ++  
Sbjct: 174 SGFMVMSVIAIASTAWSSFQFLQTSIEKVTKYCTYNRPSYVPYLLLNNEKLVDKFNYADS 233

Query: 339 C 341
           C
Sbjct: 234 C 234


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 334 LYVEPINDIPIIKFLFSPTSSLNVSISMSTHSFPTRLK 447
           +Y++ + D+P  K    P+  + VS+   T   P ++K
Sbjct: 427 VYIDSVADLPYPKSKLEPSPFVEVSLGKETQRTPVKVK 464


>AF016678-2|AAB66153.1|  432|Caenorhabditis elegans Hypothetical
           protein K07E8.7 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 351 YRLDIEMKTEMCQGLRQKEKVCK 283
           Y  D+E KT + QG   KE +CK
Sbjct: 212 YETDLEFKTTLKQGEWSKEYICK 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,429
Number of Sequences: 27780
Number of extensions: 327260
Number of successful extensions: 943
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)